Methionine analogs and methods of using same

ABSTRACT

Provided are methionine analogs which may be useful for inhibiting protein synthesis, inhibiting microbial growth and/or treating infectious diseases. In some instances, the analogs exhibit bactericidal, antibacterial, anti-infective, antimicrobial, sporicidal, disinfectant, antifungal and/or antiviral properties. Also provided are methods of treatment and methods of preparation, as well as kits and unit dosages.

CROSS REFERENCE TO RELATED APPLICATIONS

This application is a continuation of U.S. patent application Ser. No.14/565,970, filed Dec. 10, 2014, which is a continuation of U.S. patentapplication Ser. No. 14/047,845, filed Oct. 7, 2013, which is acontinuation of U.S. patent application Ser. No. 13/056,102 (now issuedas U.S. Pat. No. 8,580,859), which has an international filing date ofJul. 31, 2009, which is a National Phase application under 35 U.S.C.§371 of International Application No. PCT/US2009/052474 filed Jul. 31,2009, which claims priority to U.S. Provisional Application No.61/085,556, filed Aug. 1, 2008, the disclosures of which are herebyincorporated herein by reference in their entirety.

FIELD OF THE INVENTION

The present invention relates to novel methionine analogs which exhibitpotential bactericidal, antibacterial, anti-infective, antimicrobial,sporicidal, disinfectant, antifungal and/or antiviral activity.

BACKGROUND OF THE INVENTION

The open-end battle of mankind against disease-causing microorganismsdates back to an era many years before Robert Koch and Louis Pasture'sdiscoveries relating microorganisms as causative agents of disease.Since the early 1900's this era has been followed by the heroic effortsof microbiologists, biochemists and chemist to pave the road by theirrigorous research studies to identify natural as well as syntheticsources of antimicrobial agents, including those derived from plants,marine organisms and microorganisms. In this regard, the first report onsynthetic antimicrobials, sulfonamides, dates back to the mid-1930.Since this time, numerous natural and semi-synthetic antibacterialagents have been discovered and many of these introduced aschemotherapeutic agents to clinical use. However, over-use of thesetherapeutic agents within last 50 years has induced emergence ofbacterial mutant resistance against these agents, thus, minimizing theirtherapeutic utilities as effective weapons in fighting infection.

Two parallel approaches are taken to overcome bacterial resistance. Thefirst involves the development of agents to combat the bacterialresistance mechanism in order to revive the antibacterial potency of theparent molecule. These include, for example, inhibitors of β-lactamasesand efflux pump inhibitors. The second approach focuses on novelantimicrobial agents with different targets and mechanism of action thanthose originally used (Mohsen Daneshtalab. Novel SyntheticAntimicrobials. Top Heterocycle Chem. Springer-Verlag Berlin Heidelberg2006. 2:156-206). Unfortunately, slow progress has been made andadditional new bacterial mutant resistance is on the rise.

The prevalence of bacterial resistance to conventional antibacterialagents has prompted multi-disciplinary scientists to search forantimicrobial targets with new antimicrobial agents. Certain bacterialtargets, such as enzymes which participate in macromolecule synthesis,and are well characterized and hold promise for the discovery of novelantibacterial agents. For example, one target for discovery of a newclass of anti-infectives is protein synthesis. Although there aresimilarities between the protein synthesizing machinery of prokaryote(microorganism) and eukaryote (mammalian) cells, there are sufficientdifferences that may be exploited for the development of new andselective antimicrobial agents. Bacterial aminoacyl-tRNA synthetases(aaRS) have been considered as promising antimicrobial targets becauseof their unique roles in protein biosynthesis (Vaughan M. D., et al.Investigation of Bioisosteric effects on the integration ofsubstrates/inhibitors with the methionyl-tRNA synthetase fromEscherichia coli. Medicinal Chemistry, 2005, 1:227-237; and Renau T. E.,et al. Annual Reports in Medicinal Chemistry 1998, 33:121). Accordingly,it would be desirable to develop novel compounds which provide potentialantimicrobial activity.

The disclosures of all publications, patents, patent applications andother references referred to herein are hereby incorporated herein byreference in their entireties.

BRIEF SUMMARY OF THE INVENTION

One aspect described herein are methods of treating an infection in anindividual, comprising administering to the individual in need thereof,an effective amount of a compound of formula (I):

wherein A is —SO₃H, —SO₂R⁹, —SO₂N(R¹⁰)(R¹¹), —PO₃H₂, —PO₄H₂, or—C(O)NHOH; Y is S or O; R¹ is hydrogen, —C(O)R¹², —(B)_(w)—C, —OH, or anoptionally substituted moiety selected from alkyl, alkenyl, alkynyl,cycloalkyl, cycloalkyl-alkyl, heterocycloalkyl, heterocycloalkyl-alkyl,aryl, aralkyl, heteroaryl, and heteroaralkyl; R² is hydrogen, or anoptionally substituted moiety selected from alkyl, alkenyl, alkynyl,cycloalkyl, cycloalkyl-alkyl, heterocycloalkyl, heterocycloalkyl-alkyl,aryl, aralkyl, heteroaryl, and heteroaralkyl; or wherein R¹ and R² aretaken together to form an optionally substituted 5 or 6-memberedheterocyclic ring containing the nitrogen to which they are attached;each R³, R⁴, R⁵, R⁶, and R⁷ is independently hydrogen, halogen, —OR¹³,—NO₂, —N(R¹⁴)(R¹⁵), —SO₂R¹⁶, —SO₂N(R¹⁷)(R¹⁸), —SR¹⁹, —C(O)R²⁰,—C(O)OR²¹, —C(O)NHR²², —NHC(O)R²³, —OC(O)R²⁴, —NHC(O)OR²⁵, —NHC(O)NHR²⁶,—OC(O)OR²⁷, —OC(O)NHR²⁸, or an optionally substituted moiety selectedfrom alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkyl-alkyl,heterocycloalkyl, heterocycloalkyl-alkyl, aryl, aralkyl, heteroaryl, andheteroaralkyl; R⁸, R¹⁰, R¹¹, R¹², R¹³, R¹⁴, R¹⁵, R¹⁷, R¹⁸, R¹⁹, R²⁰,R²¹, R²², R²³, R²⁴, R²⁵, R²⁶, R²⁷, and R²⁸ are independently hydrogen,or an optionally substituted moiety selected from alkyl, alkenyl,alkynyl, cycloalkyl, cycloalkyl-alkyl, heterocycloalkyl,heterocycloalkyl-alkyl, aryl, aralkyl, heteroaryl, heteroaralkyl; R⁹ andR¹⁶ are each independently or an optionally substituted moiety selectedfrom alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkyl-alkyl,heterocycloalkyl, heterocycloalkyl-alkyl, aryl, aralkyl, heteroaryl, andheteroaralkyl; and m, n, and p are independently 0, 1, 2, 3, or 4; eachB and C is an optionally substituted amino acid moiety; and w is 0, 1,or 2; or a pharmaceutically acceptable salt thereof or solvate of theforegoing.

In another aspect, are provided methods of inhibiting the growth of amicroorganism (e.g., a bacteria, spore, fungus, or virus), comprisingcontacting the microorganism with a compound of the formula (I).

In another aspect, are provided methods of inhibiting protein synthesisin a microorganism (e.g., a bacteria, spore, fungus, or virus),comprising contacting the microorganism with a compound of the formula(I).

In another aspect, is a provided a compound of formula (I) with theproviso that when A is —SO₃H, Y is S, p is 0, both R¹ and R² arehydrogen, and R⁸ is methyl or benzyl, then n is 1, 2, 3 or 4; and withthe additional proviso that when A is —PO₃H₂, Y is S, and p is 0, then nis 1, 2, 3 or 4; or a pharmaceutically acceptable salt thereof orsolvate of the foregoing. In some of these embodiments of the compoundof formula (I), when A is —C(O)NHOH, R¹ is —C(O)R¹² (e.g., —C(O)H) or—(B)_(w)—C (e.g., R¹ is an optionally substituted amino acid moiety,such as

In some embodiments, when A is —C(O)NHOH, R¹ is —(B)_(w)—C (e.g., R¹ isan optionally substituted amino acid moiety, such as

In another aspect, is provided a formulation comprising a compound offormula (I) and a carrier. In some embodiments, the formulationcomprises an effective amount of the compound. In some embodiments, thecarrier is a pharmaceutically acceptable carrier. In some embodiments,the formulation is stable. In some embodiments, the compound is at aconcentration of about 0.1 mM to about 500 mM, and the pH is about 5.0to about 8.0. In some embodiments, the compound is at a concentration ofabout 1 mM to about 50 mM and the pH is about 6.5 to about 8.0. In someembodiments, the compound of formula (I) is in a substantially pureform.

In another aspect, is provided a compound of formula (I) for use in amethod of treating an infection in an individual.

In another aspect, is provided the use a compound of formula (I) for themanufacture of a medicament for use in a method of treating an infectionin an individual.

BRIEF DESCRIPTION OF THE FIGURES

FIG. 1A depicts growth inhibition of E. coli bacteria by methionineanalogs (12.5 mM) over a 24 hr period.

FIG. 1B depicts a gridded agar plate following incubation of samplesfrom the E. coli bacterial growth inhibition experiments after 24 hrs.

FIG. 2 depicts growth inhibition curves for various bacteria in thepresence of methionine analog I-AB.

FIG. 3 depicts the cytotoxicity for methionine analogs with CV-1 cells.

FIG. 4 depicts the cytotoxicity for methionine analogs with L929 cells.

FIG. 5 depicts the results of E. coli zone of inhibition assays formethionine analogs.

DETAILED DESCRIPTION OF THE INVENTION

Provided herein are methionine analogs comprising a modified carboxylateterminus. Such compounds may be useful for inhibiting protein synthesis,inhibiting microbial growth and/or treating infectious diseases.

In one aspect are provided the methionine analogs described herein. Inother aspects are provided methods of using the analogs describedherein, such as treating an infection in an individual. Also providedare kits and unit dosage forms of the analogs.

Abbreviations and Definitions

The terms “halo” or “halogen,” by themselves or as part of anothersubstituent, mean, unless otherwise stated, a fluorine, chlorine,bromine, or iodine atom.

The term “alkyl,” by itself or as part of another substituent, means,unless otherwise stated, a fully saturated straight-chain (linear;unbranched) or branched chain, or combination thereof, having the numberof carbon atoms specified, if designated (i.e. C₁-C₁₀ means one to tencarbons). Examples include, but are not limited to, groups such asmethyl, ethyl, n-propyl, isopropyl, n-butyl, t-butyl, isobutyl,sec-butyl, homologs and isomers of, for example, n-pentyl, n-hexyl,n-heptyl, n-octyl, and the like. If no size is designated, the alkylgroups mentioned herein contain 1-20 carbon atoms, typically 1-10 carbonatoms, or 1-8 carbon atoms, or 1-6 carbon atoms, or 1-4 carbon atoms.The term “alkylene” is by itself or in combination with other terms,represents a divalent radical derived from an alkyl, as exemplified, butnot limited, by —CH₂CH₂CH₂CH₂—.

The term “alkenyl” refers to unsaturated aliphatic groups includingstraight-chain (linear; unbranched), branched-chain groups, andcombinations thereof, having the number of carbon atoms specified, ifdesignated, which contain at least one double bond (—C═C—). All doublebonds may be independently either (E) or (Z) geometry, as well asmixtures thereof. Examples of alkenyl groups include, but are notlimited to, —CH₂—CH═CH—CH₃; —CH═CH—CH═CH₂ and—CH₂—CH═CH—CH(CH₃)—CH₂—CH₃. If no size is designated, the alkenyl groupsmentioned herein contain 2-20 carbon atoms, typically 2-10 carbon atoms,or 2-8 carbon atoms, or 2-6 carbon atoms, or 2-4 carbon atoms.

The term “alkynyl” refers to unsaturated aliphatic groups includingstraight-chain (linear; unbranched), branched-chain groups, andcombinations thereof, having the number of carbon atoms specified, ifdesignated, which contain at least one carbon-carbon triple bond(—C≡C—). Examples of alkynyl groups include, but are not limited to,—CH₂—C≡C—CH₃; —C≡C—C≡CH and —CH₂—C≡C—CH(CH₃)—CH₂—CH₃. If no size isdesignated, the alkynyl groups mentioned herein contain 2-20 carbonatoms, typically 2-10 carbon atoms, or 2-8 carbon atoms, or 2-6 carbonatoms, or 2-4 carbon atoms.

The term “cycloalkyl” by itself or in combination with other terms,represents, unless otherwise stated, a saturated or unsaturated cyclicnon-aromatic hydrocarbon radical (e.g., cyclic versions of alkyl,alkenyl, or alkynyl, or mixtures thereof). Cycloalkyl may containadditional fused rings (e.g., from 1 to 3 rings), including additionallyfused cycloalkyl and/or heterocycloalkyl rings, but excludesadditionally fused aryl and/or heteroaryl groups. Examples of cycloalkylinclude, but are not limited to, cyclopropyl, cyclobutyl, cyclopentyl,cyclohexyl, 1-cyclohexenyl, 3-cyclohexenyl, cycloheptyl, norbornyl, andthe like. If no size is designated, the alkynyl groups mentioned hereincontain 3-9 carbon atoms, typically 3-7 carbon atoms.

The term “heterocycloalkyl,” by itself or in combination with otherterms, represents a saturated or unsaturated cyclic non-aromatichydrocarbon radical containing of at least one carbon atom and at leastone annular heteroatom selected from the group consisting of O, N, P, Siand S, and wherein the nitrogen and sulfur atoms may optionally beoxidized and the nitrogen heteroatom may optionally be quaternized. Theheteroatom(s) O, N, P, S and Si may be placed at any interior positionof the heterocycloalkyl group or at the position at which theheterocycloalkyl group is attached to the remainder of the molecule.Heterocycloalkyl may contain additional fused rings (e.g., from 1 to 3rings), including additionally fused cycloalkyl and/or heterocycloalkylrings, but excludes additionally fused aryl and/or heteroaryl groups.Examples of heterocycloalkyl include, but are not limited to,thiazolidinonyl, 1-(1,2,5,6-tetrahydropyridyl), 1-piperidinyl,2-piperidinyl, 3-piperidinyl, 4-morpholinyl, 3-morpholinyl,tetrahydrofuran-2-yl, tetrahydrofuran-3-yl, tetrahydrothien-2-yl,tetrahydrothien-3-yl, 1-piperazinyl, 2-piperazinyl, and the like.

The terms “cycloalkyl-alkyl” and “heterocycloalkyl-alkyl” designate analkyl-substituted cycloalkyl group and alkyl-substitutedheterocycloalkyl, respectively, where the alkyl moiety is attached tothe parent structure. Non-limiting examples include cyclopropyl-ethyl,cyclobutyl-propyl, cyclopentyl-hexyl, cyclohexyl-isopropyl,1-cyclohexenyl-propyl, 3-cyclohexenyl-t-butyl, cycloheptyl-heptyl,norbornyl-methyl, 1-piperidinyl-ethyl, 4-morpholinyl-propyl,3-morpholinyl-t-butyl, tetrahydrofuran-2-yl-hexyl,tetrahydrofuran-3-yl-isopropyl, and the like. Cycloalkyl-alkyl andheterocycloalkyl-alkyl also include substituents in which at least onecarbon atom is present in the alkyl group and wherein another carbonatom of the alkyl group has been replaced by, for example, an oxygen,nitrogen or sulfur atom (e.g., cyclopropoxymethyl,2-piperidinyloxy-t-butyl, and the like).

The term “aryl” means, unless otherwise stated, a polyunsaturated,aromatic, hydrocarbon substituent. Aryl may contain additional fusedrings (e.g., from 1 to 3 rings), including additionally fused aryl,heteroaryl, cycloalkyl, and/or heterocycloalkyl rings. Examples of arylgroups include, but are not limited to, phenyl, 1-naphthyl, 2-naphthyl,4-biphenyl.

The term “heteroaryl” refers to aryl groups (or rings) that contain fromone to four annular heteroatoms selected from N, O, and S, wherein thenitrogen and sulfur atoms are optionally oxidized, and the nitrogenatom(s) are optionally quaternized. A heteroaryl group can be attachedto the remainder of the molecule at an annular carbon or annularheteroatom. Heteroaryl may contain additional fused rings (e.g., from 1to 3 rings), including additionally fused aryl, heteroaryl, cycloalkyl,and/or heterocycloalkyl rings. Non-limiting examples of heteroarylgroups are 1-pyrrolyl, 2-pyrrolyl, 3-pyrrolyl, 3-pyrazolyl,2-imidazolyl, 4-imidazolyl, pyrazinyl, 2-oxazolyl, 4-oxazolyl,2-phenyl-4-oxazolyl, 5-oxazolyl, 3-isoxazolyl, 4-isoxazolyl,5-isoxazolyl, 2-thiazolyl, 4-thiazolyl, 5-thiazolyl, 2-furyl, 3-furyl,2-thienyl, 3-thienyl, 2-pyridyl, 3-pyridyl, 4-pyridyl, 2-pyrimidyl,4-pyrimidyl, 5-benzothiazolyl, purinyl, 2-benzimidazolyl, 5-indolyl,1-isoquinolyl, 5-isoquinolyl, 2-quinoxalinyl, 5-quinoxalinyl,3-quinolyl, and 6-quinolyl. Substituents for each of the above notedaryl and heteroaryl ring systems are selected from the group ofacceptable substituents described below.

The term “aralkyl” designates an alkyl-substituted aryl group, where thealkyl portion is attached to the parent structure. Examples are benzyl,phenethyl, and the like. “Heteroaralkyl” designates a heteroaryl moietyattached to the parent structure via an alkyl residue. Examples includefuranylmethyl, pyridinylmethyl, pyrimidinylethyl, and the like. Aralkyland heteroaralkyl also include substituents in which at least one carbonatom of the alkyl group is present in the alkyl group and whereinanother carbon of the alkyl group has been replaced by, for example, anoxygen atom (e.g., phenoxymethyl, 2-pyridylmethoxy,3-(1-naphthyloxy)propyl, and the like).

The term “substituted” refers to the replacement of one or more hydrogenatoms of a moiety with a monovalent or divalent radical. “Optionallysubstituted” indicates that the moiety may be substituted orunsubstituted. A moiety lacking the terms “optionally substituted” and“substituted” is intended an unsubstituted moiety (e.g., “phenyl” isintended an unsubstituted phenyl unless indicated as a substitutedphenyl or an optionally substituted phenyl). Suitable substituent groupsinclude, for example, hydroxyl, nitro, amino (e.g., —NH₂ or dialkylamino), imino, cyano, halo (such as F, Cl, Br, I), haloalkyl (such as—CCl₃ or —CF₃), thio, sulfonyl, thioamido, amidino, imidino, oxo,oxamidino, methoxamidino, imidino, guanidino, sulfonamido, carboxyl,formyl, alkyl, alkoxy, alkoxy-alkyl, alkylcarbonyl, alkylcarbonyloxy(—OCOR), aminocarbonyl, arylcarbonyl, aralkylcarbonyl, carbonylamino,heteroarylcarbonyl, heteroaralkyl-carbonyl, alkylthio, aminoalkyl,cyanoalkyl, carbamoyl (—NHCOOR— or —OCONHR—), urea (—NHCONHR—), aryl andthe like, where R is any suitable group, e.g., alkyl or alkylene. Insome embodiments, the optionally substituted moiety is optionallysubstituted only with select radicals, as described. In someembodiments, the above groups (e.g., alkyl groups) are optionallysubstituted with, for example, alkyl (e.g., methyl or ethyl), haloalkyl(e.g., —CCl₃, —CH₂CHCl₂ or —CF₃), cycloalkyl (e.g., —C₃H₅, —C₄H₇,—C₅H₉), amino (e.g., —NH₂ or dialkyl amino), alkoxy (e.g., methoxy),heterocycloalkyl (e.g., as morpholine, piperazine, piperidine,azetidine), hydroxyl, and/or heteroaryl (e.g., oxazolyl). In someembodiments, a substituent group is itself optionally substituted. Insome embodiments, a substituent group is not itself substituted. Thegroup substituted onto the substitution group can be, for example,carboxyl, halo, nitro, amino, cyano, hydroxyl, alkyl, alkenyl, alkynyl,alkoxy, aminocarbonyl, —SR, thioamido, —SO₃H, —SO₂R or cycloalkyl, whereR is any suitable group, e.g., a hydrogen or alkyl.

When the substituted substituent includes a straight chain group, thesubstituent can occur either within the chain (e.g., 2-hydroxypropyl,2-aminobutyl, and the like) or at the chain terminus (e.g.,2-hydroxyethyl, 3-cyanopropyl, and the like). Substituted substituentscan be straight chain, branched or cyclic arrangements of covalentlybonded carbon or heteroatoms (N, O or S).

The term “amino acid” as used herein refers to any of the naturallyoccurring amino acids, as well as synthetic analogs (e.g.,D-stereoisomers of the naturally occurring amino acids, such as D-valineor D-alanine) and derivatives thereof. Amino acids comprise a carbonatom to which is bonded an amino group, a carboxyl group, a hydrogenatom, and a distinctive group referred to as a “side chain”. The sidechains of naturally occurring amino acids are well known in the art andinclude, for example, hydrogen (e.g., as in glycine), alkyl (e.g., as inalanine, valine, leucine, isoleucine, proline), substituted alkyl (e.g.,as in threonine, serine, methionine, cysteine, aspartic acid,asparagine, glutamic acid, glutamine, arginine, and lysine), arylalkyl(e.g., as in phenylalanine and tryptophan), substituted arylalkyl (e.g.,as in tyrosine), and heteroarylalkyl (e.g., as in histidine). Unnaturalamino acids are also known in the art, as set forth in, for example,Williams (ed.), Synthesis of Optically Active α-Amino Acids, PergamonPress (1989); Evans et al., J. Amer. Chem. Soc., 112:4011-4030 (1990);Pu et al., J. Amer. Chem. Soc., 56:1280-1283 (1991); Williams et al., J.Amer. Chem. Soc., 113:9276-9286 (1991) (and all references citedtherein), the contents of which are hereby incorporated herein byreference in its entireties, particularly with respect to the aminoacids described therein. The analogs described herein include the sidechains of unnatural amino acids as well, unless otherwise indicated.

As used herein, “treatment”, “treating”, or “treat” is an approach forobtaining beneficial or desired results, including clinical results. Forpurposes herein, beneficial or desired results include, but are notlimited to, one or more of the following: decreasing one more symptomsresulting from the condition (e.g., an infection), diminishing theextent of the condition, stabilizing the condition (e.g., preventing ordelaying the worsening of the condition, such as an infection), delay orslowing the progression of the condition, ameliorating the conditionstate, decreasing the dose of one or more other medications required totreat the condition, increasing the quality of life of an individual whohas been or is suspected of having the condition, and/or prolongingsurvival (including overall survival and progression free survival).Also encompassed by “treatment” is a reduction of pathologicalconsequence of the condition (e.g., an infection). The methods describedherein contemplate any one or more of these aspects of treatment.

As used herein, “inhibit” means to delay, reduce, slow, postpone, and/orprevent the development of the response or parameter described (e.g.,growth of a microorganism, synthesis of a protein, etc). As used herein,“delaying” means to defer, hinder, slow, retard, stabilize, and/orpostpone development of, and/or one or more symptoms of the condition(e.g., an infection). This delay can be of varying lengths of time,depending on the history of the condition and/or individual beingtreated. As is evident to one skilled in the art, a sufficient orsignificant delay can, in effect, encompass prevention, in that theindividual does not develop the condition (e.g., an infection). A methodthat “delays” development of a condition is a method that may reduce theprobability of condition development in a given time frame and/orreduces the extent of the condition in a given time frame, when comparedto not using the method. Such comparisons are typically based onclinical studies, using a statistically significant number of subjects.Development of an infection can be detected using standard methods knownin the art, such as routine physical exams or clinical detection (e.g.,culture enrichment, gene amplification, and/or ELISA detection viamicroscopy, and other imaging techniques, such as X-rays, CAT scans, PETscans and NMR). Development may also refer to condition progression thatmay be initially undetectable and includes occurrence and onset.

As used herein, an “at risk” individual is an individual who is at riskof developing a condition (e.g., an infection). An individual “at risk”may or may not have a detectable condition, and may or may not havedisplayed symptoms associated with a detectable condition prior to thetreatment methods described herein. “At risk” denotes that an individualhas one or more so-called risk factors, which are measurable parametersthat correlate with development of the condition. An individual havingone or more of these risk factors has a higher probability of developingthe condition than an individual without these risk factor(s).

As used herein, “pharmaceutically acceptable” refers to a material thatis not biologically or otherwise undesirable, e.g., the material may beincorporated (e.g., at the time of manufacturing or administration) intoa pharmaceutical formulation administered to an individual withoutcausing any significant undesirable biological effects or interacting ina deleterious manner with any of the other components of the formulationin which it is contained. As used herein, the term “pharmaceuticallyacceptable carrier,” refers to, for example, solvents, stabilizers,pH-modifiers, tonicity modifiers, adjuvants, binders, diluents, etc.,known to the skilled artisan that are suitable for administration to anindividual (e.g., a human). Combinations of two or more carriers arealso contemplated. The pharmaceutically acceptable carrier(s) and anyadditional components, as described herein, should be compatible for usein the intended route of administration (e.g., topical, oral,parenteral) for a particular dosage form. Such suitability will beeasily recognized by the skilled artisan, particularly in view of theteaching provided herein. Pharmaceutically acceptable carriers orexcipients have preferably met the required standards of toxicologicaland manufacturing testing and/or are included on the Inactive IngredientGuide prepared by the U.S. Food and Drug administration.

An “effective amount,” as used herein refer to an amount that results ina desired pharmacological and/or physiological effect for a specifiedcondition (e.g., an infection) or one or more of its symptoms and/or tocompletely or partially prevent the occurrence or recurrence of thecondition or symptom thereof and/or may be therapeutic in terms of apartial or complete cure for the condition and/or adverse effectattributable to the condition (e.g., an infection). In reference toconditions described herein (e.g., an infection), a pharmaceutically ortherapeutically effective amount may comprise an amount sufficient to,among other things, reduce the number of microbial cells, inhibitmicrobial cell growth and/or kill existing microbial cells, reduction ofmorbidity and/or mortality, and/or relieve to some extent one or more ofthe symptoms associated with the infection. In certain embodiments, thepharmaceutically effective amount is sufficient to prevent thecondition, as in being administered to an individual prophylactically.Effective amount includes the eradication or amelioration of theunderlying condition being treated and/or eradication or amelioration ofone or more of the symptoms associated with the underlying conditionsuch that the individual reports an improvement in feeling or condition(e.g., decreased pain intensity and/or duration), notwithstanding thatthe individual may still be afflicted with the underlying condition.Effective amount also includes halting or slowing the progression of thecondition (e.g., an infection), regardless of whether improvement or thecondition is realized.

The “effective amount” may vary depending on the analog beingadministered, the condition being treated/prevented (e.g., the type ofbacterial infection), the severity of the condition being treated orprevented, the age, body size, weight, and relative health of theindividual, the route and form of administration, the judgment of theattending medical or veterinary practitioner (if applicable), and otherfactors appreciated by the skilled artisan in view of the teachingprovided herein. An effective amount may be assessed, for example, byusing data from one or more clinical, physiological, biochemical,histological, electrophysiological, and/or behavioral evaluations.

As is understood in the art, an “effective amount” may be in one or moredoses, i.e., a single dose or multiple doses may be required to achievethe desired treatment endpoint. An effective amount may be considered inthe context of administering one or more additional pharmaceuticalagents, and an analog may be considered to be given in an effectiveamount if, in conjunction with one or more additional pharmaceuticalagents, one or more desirable or beneficial result(s) may be or areachieved.

When used with respect to methods of treatment/prevention and the use ofthe analogs and formulations thereof described herein, an individual “inneed thereof” may be an individual who has been diagnosed with,previously treated for, and/or suspected of having the condition to betreated (e.g., an infection). With respect to prevention, the individualin need thereof may also be an individual who is at risk for a condition(e.g., a family history of the condition, life-style factors indicativeof risk for the condition, etc.).

In some embodiments, the individual is a mammal, including, but notlimited to, bovine, horse, feline, rabbit, canine, rodent, or primate.In some embodiments, the mammal is a primate. In some embodiments, theprimate is a human. In some embodiments, the individual is human,including adults, children, infants, and preemies. In some embodiments,the individual is a non-mammal. In some variations, the primate is anon-human primate such as chimpanzees and other apes and monkey species.In some embodiments, the mammal is a farm animal such as cattle, horses,sheep, goats, and swine; pets such as rabbits, dogs, and cats;laboratory animals including rodents, such as rats, mice, and guineapigs; and the like. In some embodiments, the individual is a non-mammal,including, but not limited to, birds, and the like. The term“individual” does not denote a particular age or sex.

As used herein, “combination therapy” means a first therapy thatincludes an analog in conjunction with a second therapy (e.g., surgeryand/or an additional pharmaceutical agent) useful for treating,stabilizing, preventing, and/or delaying the condition. Administrationin “conjunction with” another compound includes administration in thesame or different formulation(s), either sequentially, simultaneously,or continuously, through the same or different routes. In someembodiments, the combination therapy optionally includes one or morepharmaceutically acceptable carriers or excipients, non-pharmaceuticallyactive compounds, and/or inert substances.

As used herein, the term “additional pharmaceutical agent,” refers to anactive agent other than an analog described herein, for example, a drug,which is administered to elicit a therapeutic effect. The pharmaceuticalagent(s) may be directed to a therapeutic effect related to thecondition that the analogs are intended to treat or prevent (e.g., aninfection) or, the pharmaceutical agent may be intended to treat orprevent a symptom of the underlying condition (e.g., fever, chronicwounds, gangrene, ulceration, swelling, diarrhea, dehydration, lethargy,vomiting, inflammation, pain, rash development, etc.) or to furtherreduce the appearance or severity of side effects of the analogs.

Reference to “about” a value or parameter herein includes (anddescribes) variations that are directed to that value or parameter perse. For example, a description referring to “about X” includes thedescription of “X”. When used in combination with measured values,“about” includes a range that encompasses at least the uncertaintyassociated with the method of measuring the particular value, and caninclude a range of plus or minus one or two standard deviations aroundthe stated value. When used to describe estimated values or compounddosages, it includes a range of plus or minus 10% of the stated value,or in some embodiments a range of plus or minus 5% around the statedvalue.

As used herein and in the appended claims, the singular forms “a,” “or,”and “the” include plural referents unless the context clearly dictatesotherwise. It is understood that aspect and variations described hereininclude “consisting” and/or “consisting essentially of” aspects andvariations.

Unless defined otherwise or clearly indicated by context, all technicaland scientific terms and abbreviations used herein have the same meaningas commonly understood by one of ordinary skill in the art to which thisinvention belongs.

Target Analogs

Described herein are methionine analogs which may be useful in thetreatment of conditions (such as infections), inhibiting the growth of amicroorganism, and/or inhibiting protein synthesis.

In one aspect, the analog is a compound of the formula (I):

wherein

A is —SO₃H, —SO₂R⁹, —SO₂N(R¹⁰)(R¹¹), —PO₃H₂, —PO₄H₂ or —C(O)NHOH;

Y is S or O;

R¹ is hydrogen, —C(O)R¹², —(B)_(w)—C, —OH, or an optionally substitutedmoiety selected from alkyl, alkenyl, alkynyl, cycloalkyl,cycloalkyl-alkyl, heterocycloalkyl, heterocycloalkyl-alkyl, aryl,aralkyl, heteroaryl, and heteroaralkyl;

R² is hydrogen, or an optionally substituted moiety selected from alkyl,alkenyl, alkynyl, cycloalkyl, cycloalkyl-alkyl, heterocycloalkyl,heterocycloalkyl-alkyl, aryl, aralkyl, heteroaryl, and heteroaralkyl;

or wherein R¹ and R² are taken together to form an optionallysubstituted 5 or 6-membered heterocyclic ring containing the nitrogen towhich they are attached;

each R³, R⁴, R⁵, R⁶, and R⁷ is independently hydrogen, halogen, —OR¹³,—NO₂, —N(R¹⁴)(R¹⁵), —SO₂R¹⁶, —SO₂N(R¹⁷)(R¹⁸), —SR¹⁹, —C(O)R²⁰,—C(O)OR²¹, —C(O)NHR²², —NHC(O)R²³, —OC(O)R²⁴, —NHC(O)OR²⁵, —NHC(O)NHR²⁶,—OC(O)OR²⁷, —OC(O)NHR²⁸, or an optionally substituted moiety selectedfrom alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkyl-alkyl,heterocycloalkyl, heterocycloalkyl-alkyl, aryl, aralkyl, heteroaryl, andheteroaralkyl;

R⁸, R¹⁰, R¹¹, R¹², R¹³, R¹⁴, R¹⁵, R¹⁷, R¹⁸, R¹⁹, R²⁰, R²¹, R²², R²³,R²⁴, R²⁵, R²⁶, R²⁷, and R²⁸ are independently hydrogen, or an optionallysubstituted moiety selected from alkyl, alkenyl, alkynyl, cycloalkyl,cycloalkyl-alkyl, heterocycloalkyl, heterocycloalkyl-alkyl, aryl,aralkyl, heteroaryl, and heteroaralkyl;

R⁹ and R¹⁶ are independently an optionally substituted moiety selectedfrom alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkyl-alkyl,heterocycloalkyl, heterocycloalkyl-alkyl, aryl, aralkyl, heteroaryl,heteroaralkyl;

m, n, and p are independently 0, 1, 2, 3, or 4;

each B and C is an optionally substituted amino acid moiety; and

w is 0, 1, or 2;

or a pharmaceutically acceptable salt thereof or solvate of theforegoing.

In some embodiments of the compound of formula I A is —SO₃H, —SO₂R⁹,—SO₂N(R¹⁰)(R¹¹), —PO₃H₂, —PO₄H₂ or —C(O)NHOH; Y is S or O; R¹ ishydrogen, —C(O)R¹², —(B)_(w)—C, —OH, or an optionally substituted moietyselected from alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkyl-alkyl,heterocycloalkyl, heterocycloalkyl-alkyl, aryl, aralkyl, heteroaryl, andheteroaralkyl; R² is hydrogen, or an optionally substituted moietyselected from alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkyl-alkyl,heterocycloalkyl, heterocycloalkyl-alkyl, aryl, aralkyl, heteroaryl, andheteroaralkyl; or wherein R¹ and R² are taken together to form anoptionally substituted 5 or 6-membered heterocyclic ring containing thenitrogen to which they are attached; each R³, R⁴, R⁵, R⁶, and R⁷ isindependently hydrogen, halogen, —OR¹³, —NO₂, —N(R¹⁴)(R⁵), —SO₂R¹⁶,—SO₂N(R¹⁷)(R¹⁸), —SR¹⁹, —C(O)R²⁰, —C(O)OR²¹, —C(O)NHR²², —NHC(O)R²³,—OC(O)R²⁴, —NHC(O)OR²⁵, —NHC(O)NHR²⁶, —OC(O)OR²⁷, —OC(O)NHR²⁸, or anoptionally substituted moiety selected from alkyl, alkenyl, alkynyl,cycloalkyl, cycloalkyl-alkyl, heterocycloalkyl, heterocycloalkyl-alkyl,aryl, aralkyl, heteroaryl, and heteroaralkyl; R⁸, R¹⁰, R¹¹, R¹², R¹³,R¹⁴, R¹⁵, R¹⁷, R¹⁸, R¹⁹, R²⁰, R²¹, R²², R²³, R²⁴, R²⁵, R²⁶, R²⁷, and R²⁸are independently hydrogen, or an optionally substituted moiety selectedfrom alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkyl-alkyl,heterocycloalkyl, heterocycloalkyl-alkyl, aryl, aralkyl, heteroaryl, andheteroaralkyl; R⁹ and R¹⁶ are independently an optionally substitutedmoiety selected from alkyl, alkenyl, alkynyl, cycloalkyl,cycloalkyl-alkyl, heterocycloalkyl, heterocycloalkyl-alkyl, aryl,aralkyl, heteroaryl, heteroaralkyl; m, n, and p are independently 0, 1,2, 3, or 4; each B and C is an optionally substituted amino acid moiety;and w is 0, 1, or 2; or a pharmaceutically acceptable salt thereof orsolvate of the foregoing.

In some embodiments, the compound of formula I has the proviso that whenA is —SO₃H, Y is S, p is 0, both R¹ and R² are hydrogen, and R⁸ ismethyl or benzyl, then n is 1, 2, 3 or 4. In some embodiments, thecompound has the additional proviso that when A is —PO₃H₂, Y is S, and pis 0, then n is 1, 2, 3 or 4. In some of these embodiments of thecompound of formula I, when A is —C(O)NHOH, R¹ is —C(O)R² (e.g., —C(O)H)or —(B)_(w)—C (e.g., R¹ is an optionally substituted amino acid moiety,such

In some embodiments, the compound of formula I has the proviso that whenA is —SO₃H, both R¹ and R² are hydrogen, and R⁸ is methyl or benzyl,then n is 1, 2, 3 or 4. In some embodiments, the compound has theadditional proviso that when A is —PO₃H₂, then n is 1, 2, 3 or 4. Insome of these embodiments of the compound of formula I, when A is—C(O)NHOH, R¹ is —C(O)R¹² (e.g., —C(O)H) or —(B)_(w)—C (e.g., R¹ is anoptionally substituted amino acid moiety, such as

In some embodiments, the compound of formula I has the proviso that whenA is —SO₃H, both R¹ and R² are hydrogen, and R⁸ is alkyl or aralkyl,then n is 1, 2, 3 or 4. In some embodiments, the compound has theproviso when A is —SO₃H, both R¹ and R² are hydrogen, and R⁸ is anoptionally substituted alkyl or an optionally substituted aralkyl, thenn is 1, 2, 3 or 4. In some embodiments, the compound of formula I hasthe proviso that when A is —PO₃H₂, then n is 1, 2, 3 or 4. In some ofthese embodiments of the compound of formula I, when A is —C(O)NHOH, R¹is —C(O)R¹² (e.g., —C(O)H) or —(B)_(w)—C (e.g., R¹ is an optionallysubstituted amino acid moiety, such as

In some of these embodiments of the compound of formula I, eachoptionally substituted moiety is the indicated moiety optionallysubstituted with one or more groups selected from hydroxyl, nitro,amino, imino, cyano, halo, haloalkyl, thiol, thioalkyl, sulfonyl,thioamido, amidino, oxo, oxamidino, methoxamidino, imidino, guanidino,sulfonamido, carboxyl, formyl, alkyl, cycloalkyl, alkoxy, alkoxy-alkyl,alkylcarbonyl, alkylcarbonyloxy, aminocarbonyl, aryl, heteroaryl,arylcarbonyl, aralkylcarbonyl, carbonylamino, heteroarylcarbonyl,heteroaralkyl-carbonyl, alkylthio, aminoalkyl, cyanoalkyl, carbamoyl,and urea. In some embodiments, each optionally substituted moiety is theindicated moiety optionally substituted with one or more groups selectedfrom hydroxyl, nitro, amino, cyano, halo, haloalkyl, thiol, thioalkyl,sulfonyl, thioamido, amidino, carboxyl, formyl, alkyl, cycloalkyl,alkoxy, and alkoxy-alkyl.

In some of these embodiments of the compound of formula I, A is —SO₃H,—SO₂R⁹, —SO₂N(R¹⁰)(R¹¹), —PO₃H₂ or —C(O)NHOH. In some embodiments, A is—SO₃H, —SO₂R⁹, —SO₂N(R¹⁰)(R¹¹), or —PO₃H₂. In some embodiments, A is—SO₃H or —PO₃H₂. In some embodiments, A is —PO₄H₂ or —PO₃H₂. In someembodiments, A is —PO₃H₂. In some embodiments, A is —PO₄H₂. In someembodiments, A is —SO₃H. In some embodiments A is —C(O)NHOH. In someembodiments A is —C(O)NHOH and R¹ is —(B)_(w)—C (e.g., R¹ is anoptionally substituted amino acid moiety, such as

In some of these embodiments, R² is H.

In some of these embodiments of the compound of formula I, Y is S. Insome embodiments, Y is O.

In some of these embodiments of the compound of formula I, m is 1, 2, or3. In some embodiments, m is 1 or 2. In some embodiments, m is 1. Insome embodiments, m is 2. In some embodiments, n is 0, 1, or 2. In someembodiments, n is 0 or 1. In some embodiments, n is 0. In someembodiments, n is 1. In some embodiments, p is 0, 1, or 2. In someembodiments, p is 0 or 1. In some embodiments, p is 0. In someembodiments, wherein p is 1. In some embodiments, m is 1 or 2, n is 0 or1, and p is 0 or 1. In some embodiments, m is 1 or 2, n is 0, and p is0. In some embodiments, m is 1 or 2, n is 1, and p is 0. In someembodiments, m is 1 or 2, n is 0, and p is 1. In some embodiments, m is1, n is 0, and p is 0. In some embodiments, m is 2, n is 0, and p is 0.In some embodiments, m is 1, n is 1, and p is 0. In some embodiments, mis 2, n is 1, and p is 0. In some embodiments, m is 1, n is 0, and pis 1. In some embodiments, m is 2, n is 0, and p is 1.

In some of these embodiments of the compound of formula I, R¹ ishydrogen, —C(O)R², —(B)_(q)—C, —OH, or an optionally substituted alkyl.In some embodiments, R¹ is hydrogen, —C(O)R¹², or —(B)_(q)—C. In someembodiments, R¹ is hydrogen or —C(O)R². In some embodiments, R¹ ishydrogen. In some embodiments, R¹ is —(B)_(q)—C. In some embodiments, R¹is —C(O)R¹². In some of these embodiments, R¹² is hydrogen, or anoptionally substituted alkyl. In some embodiments, R¹² is hydrogen.

In some of these embodiments of the compound of formula I, R¹ is—(B)_(w)—C. In some embodiments, the B moiety attached to R¹ is linkedthrough an amide bond. In some embodiments, each B and C moiety isattached to its adjacent B or C moiety through an amide bond. In someembodiments, at least one B or C is an optionally substituted aliphaticamino acid moiety (e.g., glycine, valine, alanine, leucine, andisoleucine). In some embodiments, each B and C is an optionallysubstituted aliphatic amino acid moiety (e.g., glycine, valine, alanine,leucine, and isoleucine). In some embodiments, each B and C is selectedfrom glycine and valine. In some embodiments, R¹ is selected from thegroup consisting of

In some of these embodiments, R² is H. In some embodiments, R¹ is

and R² is H. In some of these embodiments, w is 0. In some embodiments,w is 1. In other embodiments, w is 2. In some embodiments, at least oneB or C amino acid is in the D form. In some embodiments, at least one Bor C amino acid is in the L form. In some embodiments, each B and Camino acid is in the D form. In some embodiments, each B and C aminoacid (e.g., gly-gly-) is in the L form.

In some of these embodiments of the compound of formula I, each R³, R⁴,R⁵, R⁶, and R⁷ is independently hydrogen, halogen (e.g., Cl, F, I, Br),or —OR¹³. In some embodiments, each R³, R⁴, R⁵, R⁶, and R⁷ isindependently hydrogen or halogen (e.g., Cl, F, I, Br). In someembodiments, R³, R⁴, R⁵, R⁶, and R⁷ are hydrogen.

In some of these embodiments of the compound of formula I, R⁸ is anoptionally substituted moiety selected from alkyl, alkenyl, alkynyl,cycloalkyl, cycloalkyl-alkyl, heterocycloalkyl, heterocycloalkyl-alkyl,aryl, aralkyl, heteroaryl, and heteroaralkyl. In some embodiments, R⁸ ishydrogen or an optionally substituted alkyl. In some embodiments, R⁸ ishydrogen. In some embodiments, R⁸ is an optionally substituted alkyl. Insome embodiments, R⁸ is alkyl. In some embodiments, R⁸ is a C₁-C₅ alkyl.In some embodiments, R⁸ is methyl or ethyl. In some embodiments, R⁸ ismethyl.

In some embodiments, the compound of formula (I) is any one,combination, or all of:

(I-A): 2-amino-4-(methylthio)butane-1-sulfonic acid;

(I-B): 2-formamido-4-(methylthio)butane-1-sulfonic acid;

(I-C): 1-amino-3-(methylthio)propane-1-sulfonic acid;

(I-D): 1-formamido-3-(methylthio)propane-1-sulfonic acid;

(I-E): 1-amino-4-(methylthio)butane-2-sulfonic acid;

(I-F): 1-formamido-4-(methylthio)butane-2-sulfonic acid;

(1-G): 2-amino-3-(methylthio)propane-1-sulfonic acid;

(I-H): 2-formamido-3-(methylthio)propane-1-sulfonic acid;

(I-I): 1-amino-2-(methylthio)ethanesulfonic acid;

(I-J): 1-formamido-2-(methylthio)ethanesulfonic acid;

(I-K): 1-amino-3-(methylthio)propane-2-sulfonic acid;

(I-L): 1-formamido-3-(methylthio)propane-2-sulfonic acid;

(I-M): 2-amino-4-methoxybutane-1-sulfonic acid;

(I-N): 2-formamido-4-methoxybutane-1-sulfonic acid;

(1-0): 1-amino-3-methoxypropane-1-sulfonic acid;

(I-P): 1-formamido-3-methoxypropane-1-sulfonic acid;

(I-Q): 1-amino-4-methoxybutane-2-sulfonic acid;

(I-R): 1-formamido-4-methoxybutane-2-sulfonic acid;

(I-S): 2-amino-3-methoxypropane-1-sulfonic acid;

(I-T): 2-formamido-3-methoxypropane-1-sulfonic acid;

(I-U): 1-amino-2-methoxyethanesulfonic acid;

(I-V): 1-formamido-2-methoxyethanesulfonic acid;

(I-W): 1-amino-3-methoxypropane-2-sulfonic acid;

(I-X): 1-formamido-3-methoxypropane-2-sulfonic acid;

(I-Y): 21-(2-aminoacetamido)-3-(methylthio)propane-1-sulfonic acid;

(I-Z): 2-(2-aminoacetamido)-4-(methylthio)butane-1-sulfonic acid;

(I-AA): 2-amino-N-hydroxy-4-(methylthio)butanamide;

(I-AB): 2-(2-aminoacetamido)-N-hydroxy-4-(methylthio)butanamide;

or a pharmaceutically acceptable salt thereof or solvate of theforegoing.

In some embodiments, the compound of formula (I) is2-amino-4-(methylthio)butane-1-sulfonic acid,2-formamido-4-(methylthio)butane-1-sulfonic acid;1-amino-3-(methylthio)propane-1-sulfonic acid;1-formamido-3-(methylthio)propane-1-sulfonic acid;2-(2-aminoacetamido)-4-(methylthio)butane-1-sulfonic acid; or2-(2-aminoacetamido)-N-hydroxy-4-(methylthio)butanamide.

In some embodiments, the compound of formula (I) is2-amino-4-(methylthio)butane-1-sulfonic acid;2-(2-aminoacetamido)-4-(methylthio)butane-1-sulfonic acid; or2-(2-aminoacetamido)-N-hydroxy-4-(methylthio)butanamide.

In some embodiments, the compound of formula (I) is2-amino-4-(methylthio)butane-1-sulfonic acid,2-formamido-4-(methylthio)butane-1-sulfonic acid;1-amino-3-(methylthio)propane-1-sulfonic acid; or1-formamido-3-(methylthio)propane-1-sulfonic acid.

In some embodiments, the compound of formula (I) is2-amino-4-(methylthio)butane-1-sulfonic acid. In some embodiments, thecompound of formula (I) is2-(2-aminoacetamido)-4-(methylthio)butane-1-sulfonic acid; or2-(2-aminoacetamido)-N-hydroxy-4-(methylthio)butanamide. In someembodiments, the compound of formula (I) is2-(2-aminoacetamido)-4-(methylthio)butane-1-sulfonic acid. In someembodiments, the compound of formula (I) is2-(2-aminoacetamido)-N-hydroxy-4-(methylthio)butanamide.

In one aspect, the analog is a compound of the formula (II), (III), or(IV):

wherein

each R¹ is independently hydrogen, —C(O)R¹², —(B)_(w)—C, —OH, or anoptionally substituted moiety selected from alkyl, alkenyl, alkynyl,cycloalkyl, cycloalkyl-alkyl, heterocycloalkyl, heterocycloalkyl-alkyl,aryl, aralkyl, heteroaryl, and heteroaralkyl;

each R³, R⁴, R⁵, R⁶, and R⁷ is independently hydrogen, halogen, —OR¹³,—NO₂, —N(R¹⁴)(R¹⁵), —SO₂R¹⁶, —SO₂N(R¹⁷)(R′), —SR¹⁹, —C(O)R²⁰, —C(O)OR²¹,—C(O)NHR²², —NHC(O)R²³, —OC(O)R²⁴, —NHC(O)OR²⁵, —NHC(O)NHR²⁶,—OC(O)OR²⁷, —OC(O)NHR²⁸, or an optionally substituted moiety selectedfrom alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkyl-alkyl,heterocycloalkyl, heterocycloalkyl-alkyl, aryl, aralkyl, heteroaryl, andheteroaralkyl;

each R⁸, R¹², R¹³, R¹⁴, R¹⁵, R¹⁷, R¹⁸, R¹⁹, R²⁰, R²¹, R²², R²³, R²⁴,R²⁵, R²⁶, R²⁷, and R²⁸ is independently hydrogen, or an optionallysubstituted moiety from alkyl, alkenyl, alkynyl, cycloalkyl,cycloalkyl-alkyl, heterocycloalkyl, heterocycloalkyl-alkyl, aryl,aralkyl, heteroaryl, and heteroaralkyl;

each R¹⁶ is independently an optionally substituted moiety from alkyl,alkenyl, alkynyl, cycloalkyl, cycloalkyl-alkyl, heterocycloalkyl,heterocycloalkyl-alkyl, aryl, aralkyl, heteroaryl, and heteroaralkyl;

each q is independently 1 or 2; and

each t is independently 0 or 1;

each B and C is independently an optionally substituted amino acidmoiety; and each w is independently 0, 1, or 2;

or a pharmaceutically acceptable salt thereof or solvate of theforegoing.

In some embodiments, the compound is of formula II only. In someembodiments, the compound is of formula III only. In some embodiments,the compound is of formula IV only.

In some embodiments, the compound of formula II has the proviso thatwhen R¹, R³, R⁴, R⁵, R⁶, and R⁷ is each hydrogen, and R⁸ is methyl orbenzyl, then t is 1. In some embodiments, the compound of formula II hasthe proviso that when R¹ is hydrogen, and R⁸ is methyl or benzyl, then tis 1. In some embodiments, the compound of formula II has the provisothat when R¹ is hydrogen, and R⁸ is an optionally substituted alkyl oran optionally substituted aralkyl, then t is 1. In some embodiments, thecompound of formula II has the proviso when R¹ is hydrogen, and R⁸ is anoptionally substituted alkyl or an optionally substituted aralkyl, thent is 1.

In some embodiments of the compound of formula III, t is 1.

In some embodiments of the compound of formula IV, R¹ is other than H.In some embodiments of the compound of formula IV, R¹ is —C(O)R¹² (e.g.,—C(O)H) or —(B)_(w)—C (e.g., R¹ is an optionally substituted amino acidmoiety, such as

In some embodiments of the compound of formula IV, R¹ is —(B)_(w)—C(e.g., R¹² is an optionally substituted amino acid moiety, such as

In some of these embodiments of the compound of formula II, III, or IV,each optionally substituted moiety is the indicated moiety optionallysubstituted with one or more groups selected from hydroxyl, nitro,amino, imino, cyano, halo, haloalkyl, thiol, thioalkyl, sulfonyl,thioamido, amidino, oxo, oxamidino, methoxamidino, imidino, guanidino,sulfonamido, carboxyl, formyl, alkyl, cycloalkyl, alkoxy, alkoxy-alkyl,alkylcarbonyl, alkylcarbonyloxy, aminocarbonyl, aryl, heteroaryl,arylcarbonyl, aralkylcarbonyl, carbonylamino, heteroarylcarbonyl,heteroaralkyl-carbonyl, alkylthio, aminoalkyl, cyanoalkyl, carbamoyl,and urea. In some embodiments, each optionally substituted moiety is theindicated moiety optionally substituted with one or more groups selectedfrom hydroxyl, nitro, amino, cyano, halo, haloalkyl, thiol, thioalkyl,sulfonyl, thioamido, amidino, carboxyl, formyl, alkyl, cycloalkyl,alkoxy, and alkoxy-alkyl.

In some of these embodiments of the compound of formula II, III, or IV,q is 1. In some embodiments, q is 2. In some embodiments, t is 0. Insome embodiments, t is 1. In some embodiments, q is 1 and t is 0. Insome embodiments, q is 1 and t is 1. In some embodiments, q is 2 and tis 0. In some embodiments, q is 2 and t is 1.

In some of these embodiments of the compound of formula II, III, or IV,each R¹ is independently hydrogen, —C(O)R′², —OH, or an optionallysubstituted alkyl. In some embodiments, each R¹ is independentlyhydrogen or —C(O)R¹². In some embodiments, R¹ is hydrogen. In someembodiments, R¹ is —C(O)R¹² (e.g., —C(O)H). In some embodiments, eachR¹² is independently hydrogen, or an optionally substituted alkyl. Insome embodiments, R¹² is hydrogen.

In some of these embodiments of the compound of formula II, III, or IV,R¹ is —(B)_(w)—C. In some embodiments, the B moiety attached to R¹ islinked through an amide bond. In some embodiments, each B and C moietyis attached to its adjacent B or C moiety through an amide bond. In someembodiments, at least one B or C is an optionally substituted aliphaticamino acid moiety (e.g., glycine, valine, alanine, leucine, andisoleucine). In some embodiments, each B and C is an optionallysubstituted aliphatic amino acid moiety (e.g., glycine, valine, alanine,leucine, and isoleucine). In some embodiments, each B and C is selectedfrom glycine and valine. In some embodiments, R¹ is selected from thegroup consisting of

In some embodiments, R¹ is

In some of these embodiments, w is 0. In some embodiments, w is 1. Inother embodiments, w is 2. In some embodiments, at least one B or Camino acid is in the D form. In some embodiments, at least one B or Camino acid is in the L form. In some embodiments, each B and C aminoacid is in the D form. In some embodiments, each B and C amino acid(e.g., gly-gly-) is in the L form.

In some of these embodiments of the compound of formula I, III, or IV,each R³, R⁴, R⁵, R⁶, and R⁷ is independently hydrogen, halogen (e.g.,Cl, F, I, Br), or —OR¹³. In some embodiments, each R³, R⁴, R⁵, R⁶, andR⁷ is independently hydrogen or halogen (e.g., Cl, F, I, Br). In someembodiments, R³, R⁴, R⁵, R⁶, and R⁷ are hydrogen.

In some of these embodiments of the compound of formula II, III, or IV,each R⁸ is independently an optionally substituted moiety selected fromalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkyl-alkyl, heterocycloalkyl,heterocycloalkyl-alkyl, aryl, aralkyl, heteroaryl, and heteroaralkyl. Insome embodiments, each R⁸ is independently hydrogen or an optionallysubstituted alkyl. In some embodiments, R⁸ is hydrogen. In someembodiments, each R⁸ is independently an optionally substituted alkyl.In some embodiments, R⁸ is an alkyl. In some embodiments, R⁸ is a C₁-C₅alkyl. In some embodiments, each R⁸ is independently methyl or ethyl. Insome embodiments, R⁸ is methyl.

In some embodiments of the compound of formula II, R¹ is independentlyhydrogen or —C(O)H; each R³, R⁴, R⁵, R⁶, and R⁷ is independentlyhydrogen or halogen (e.g., Cl, F, I, Br); each R⁸ is independentlyhydrogen, or an optionally substituted moiety selected from alkyl,cycloalkyl, cycloalkyl-alkyl, heterocycloalkyl, heterocycloalkyl-alkyl,aryl, aralkyl, heteroaryl, and heteroaralkyl; with the proviso that whenR¹ is hydrogen, and R⁸ is alkyl or aralkyl, then t is 1; or apharmaceutically acceptable salt thereof or solvate of the foregoing. Insome of these embodiments, t is 0. In some embodiments, t is 1.

In some embodiments of the compound of formula II, R¹ is independentlyhydrogen or —C(O)H; each R³, R⁴, R⁵, R⁶, and R⁷ is independentlyhydrogen or halogen (e.g., Cl, F, I, Br); and each R⁸ is independentlyhydrogen or an optionally substituted alkyl (e.g., methyl or ethyl);with the proviso that when R¹ is hydrogen, and R⁸ is alkyl, then t is 1;or a pharmaceutically acceptable salt thereof or solvate of theforegoing. In some of these embodiments, t is 0. In some embodiments, tis 1.

In some embodiments of the compound of formula III, R¹ is independentlyhydrogen or —C(O)H; each R³, R⁴, R⁵, R⁶, and R⁷ is independentlyhydrogen or halogen (e.g., Cl, F, I, Br); each R⁸ is independentlyhydrogen, or an optionally substituted moiety selected from alkyl,cycloalkyl, cycloalkyl-alkyl, heterocycloalkyl, heterocycloalkyl-alkyl,aryl, aralkyl, heteroaryl, and heteroaralkyl; and t is 1; or apharmaceutically acceptable salt thereof or solvate of the foregoing. Insome of these embodiments, q is 1. In some embodiments, q is 2.

In some embodiments of the compound of formula III, R¹ is independentlyhydrogen or —C(O)H; each R³, R⁴, R⁵, R⁶, and R⁷ is independentlyhydrogen or halogen (e.g., Cl, F, I, Br); each R⁸ is independentlyhydrogen or an optionally substituted alkyl (e.g., methyl or ethyl); andt is 1; or a pharmaceutically acceptable salt thereof or solvate of theforegoing. In some of these embodiments, q is 1. In some embodiments, qis 2.

In some embodiments of the compound of formula IV, R¹ is independentlyhydrogen or —C(O)H; each R³, R⁴, R⁵, R⁶, and R⁷ is independentlyhydrogen or halogen (e.g., Cl, F, I, Br); each R⁸ is independentlyhydrogen, or an optionally substituted moiety selected from alkyl,cycloalkyl, cycloalkyl-alkyl, heterocycloalkyl, heterocycloalkyl-alkyl,aryl, aralkyl, heteroaryl, and heteroaralkyl; or a pharmaceuticallyacceptable salt thereof or solvate of the foregoing. In some of theseembodiments, t is 0. In some embodiments, t is 1.

In some embodiments of the compound of formula IV, R¹ is independentlyhydrogen or —C(O)H; each R³, R⁴, R⁵, R⁶, and R⁷ is independentlyhydrogen or halogen (e.g., Cl, F, I, Br); and each R⁸ is independentlyhydrogen or an optionally substituted alkyl (e.g., methyl or ethyl); ora pharmaceutically acceptable salt thereof or solvate of the foregoing.In some of these embodiments, t is 0. In some embodiments, t is 1.

In some embodiments of the compound of formula IV, R¹ is —C(O)H or—(B)_(w)—C (e.g., R¹ is an optionally substituted amino acid moiety,such as

each R³, R⁴, R⁵, R⁶, and R⁷ is independently hydrogen or halogen (e.g.,Cl, F, I, Br); each R⁸ is independently hydrogen, or an optionallysubstituted moiety selected from alkyl, cycloalkyl, cycloalkyl-alkyl,heterocycloalkyl, heterocycloalkyl-alkyl, aryl, aralkyl, heteroaryl, andheteroaralkyl; or a pharmaceutically acceptable salt thereof or solvateof the foregoing. In some of these embodiments, t is 0. In someembodiments, t is 1.

In some embodiments of the compound of formula IV, R¹ is —C(O)H or—(B)_(w)—C (e.g., R¹ is an optionally substituted amino acid moiety,such as

each R³, R⁴, R⁵, R⁶, and R⁷ is independently hydrogen or halogen (e.g.,Cl, F, I, Br); and each R⁸ is independently hydrogen or an optionallysubstituted alkyl (e.g., methyl or ethyl); or a pharmaceuticallyacceptable salt thereof or solvate of the foregoing. In some of theseembodiments, t is 0. In some embodiments, t is 1.

In some embodiments of the compound of formula IV, R¹ is —(B)_(w)—C(e.g., R¹ is an optionally substituted amino acid moiety, such as

each R³, R⁴, R⁵, R⁶, and R⁷ is independently hydrogen or halogen (e.g.,Cl, F, I, Br); and each R⁸ is independently hydrogen or an optionallysubstituted alkyl (e.g., methyl or ethyl); or a pharmaceuticallyacceptable salt thereof or solvate of the foregoing. In some of theseembodiments, t is 0. In some embodiments, t is 1.

In another aspect, the analog is a compound of the formula (V), (VI), or(VII):

wherein

A is —SO₃H, —SO₂R⁹, —SO₂N(R¹⁰)(R¹¹), —PO₃H₂, —PO₄H₂ or —C(O)NHOH;

Y is S or O;

R¹ is hydrogen, —C(O)R¹², —(B)_(w)—C, —OH, or an optionally substitutedmoiety selected from alkyl, alkenyl, alkynyl, cycloalkyl,cycloalkyl-alkyl, heterocycloalkyl, heterocycloalkyl-alkyl, aryl,aralkyl, heteroaryl, and heteroaralkyl;

R² is hydrogen, or an optionally substituted moiety selected from alkyl,alkenyl, alkynyl, cycloalkyl, cycloalkyl-alkyl, heterocycloalkyl,heterocycloalkyl-alkyl, aryl, aralkyl, heteroaryl, and heteroaralkyl;

or wherein R¹ and R² are taken together to form an optionallysubstituted 5 or 6-membered heterocyclic ring containing the nitrogen towhich they are attached;

each R³, R⁴, R⁵, R⁶, R⁷, and R⁸ is independently hydrogen, halogen,—OR¹³, —NO₂, —N(R¹⁴)(R¹⁵), —SO₂R¹⁶, —SO₂N(R¹⁷)(R¹⁸), —SR¹⁹, —C(O)R²⁰,—C(O)OR²¹, —C(O)NHR²², —NHC(O)R²³, —OC(O)R²⁴, —NHC(O)OR²⁵, —NHC(O)NHR²⁶,—OC(O)OR²⁷, —OC(O)NHR²⁸, or an optionally substituted moiety selectedfrom alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkyl-alkyl,heterocycloalkyl, heterocycloalkyl-alkyl, aryl, aralkyl, heteroaryl, andheteroaralkyl;

R¹⁰, R¹¹, R¹², R¹³, R¹⁴, R¹⁵, R¹⁷, R¹⁸, R¹⁹, R²⁰, R²¹, R²², R²³, R²⁴,R²⁵, R²⁶, R²⁷, and R²⁸ are independently hydrogen, or an optionallysubstituted moiety selected from alkyl, alkenyl, alkynyl, cycloalkyl,cycloalkyl-alkyl, heterocycloalkyl, heterocycloalkyl-alkyl, aryl,aralkyl, heteroaryl, and heteroaralkyl;

R¹ and R¹⁶ are independently an optionally substituted moiety selectedfrom alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkyl-alkyl,heterocycloalkyl, heterocycloalkyl-alkyl, aryl, aralkyl, heteroaryl,heteroaralkyl;

n is 0 or 1;

each B and C is an optionally substituted amino acid moiety; and

w is 0, 1, or 2;

or a pharmaceutically acceptable salt thereof or solvate of theforegoing.

In some of these embodiments of the compound of formula V, VI, or VII,each optionally substituted moiety is the indicated moiety optionallysubstituted with one or more groups selected from hydroxyl, nitro,amino, imino, cyano, halo, haloalkyl, thiol, thioalkyl, sulfonyl,thioamido, amidino, oxo, oxamidino, methoxamidino, imidino, guanidino,sulfonamido, carboxyl, formyl, alkyl, cycloalkyl, alkoxy, alkoxy-alkyl,alkylcarbonyl, alkylcarbonyloxy, aminocarbonyl, aryl, heteroaryl,arylcarbonyl, aralkylcarbonyl, carbonylamino, heteroarylcarbonyl,heteroaralkyl-carbonyl, alkylthio, aminoalkyl, cyanoalkyl, carbamoyl,and urea. In some embodiments, each optionally substituted moiety is theindicated moiety optionally substituted with one or more groups selectedfrom hydroxyl, nitro, amino, cyano, halo, haloalkyl, thiol, thioalkyl,sulfonyl, thioamido, amidino, carboxyl, formyl, alkyl, cycloalkyl,alkoxy, and alkoxy-alkyl.

In some of these embodiments of the compound of formula V, VI, or VII, Ais —SO₃H, —SO₂R⁹, —SO₂N(R¹⁰)(R¹¹), —PO₃H₂, or —C(O)NHOH; Y is S or O; R¹is hydrogen, —C(O)R¹², —(B)_(w)—C, —OH, or an optionally substitutedmoiety selected from alkyl, alkenyl, alkynyl, cycloalkyl,cycloalkyl-alkyl, heterocycloalkyl, heterocycloalkyl-alkyl, aryl,aralkyl, heteroaryl, and heteroaralkyl; R² is hydrogen, or an optionallysubstituted moiety selected from alkyl, alkenyl, alkynyl, cycloalkyl,cycloalkyl-alkyl, heterocycloalkyl, heterocycloalkyl-alkyl, aryl,aralkyl, heteroaryl, and heteroaralkyl; or wherein R¹ and R² are takentogether to form an optionally substituted 5 or 6-membered heterocyclicring containing the nitrogen to which they are attached; each R³, R⁴,R⁵, R⁶, R⁷, and R⁸ is independently hydrogen, halogen, —OR¹³, —NO₂,—N(R¹⁴)(R¹⁵), —SO₂R¹⁶, —SO₂N(R¹⁷)(R¹⁸), —SR¹⁹, —C(O)R²⁰, —C(O)OR²¹,—C(O)NHR²², —NHC(O)R²³, —OC(O)R²⁴, —NHC(O)OR²⁵, —NHC(O)NHR²⁶,—OC(O)OR²⁷, —OC(O)NHR²⁸, or an optionally substituted moiety selectedfrom alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkyl-alkyl,heterocycloalkyl, heterocycloalkyl-alkyl, aryl, aralkyl, heteroaryl, andheteroaralkyl; R¹⁰, R¹¹, R¹², R¹³, R¹⁴, R¹⁵, R¹⁷, R¹⁸, R¹⁹, R²⁰, R²¹,R²², R²³, R²⁴, R²⁵, R²⁶, R²⁷, and R²⁸ are independently hydrogen, or anoptionally substituted moiety selected from alkyl, alkenyl, alkynyl,cycloalkyl, cycloalkyl-alkyl, heterocycloalkyl, heterocycloalkyl-alkyl,aryl, aralkyl, heteroaryl, and heteroaralkyl; R⁹ and R¹⁶ areindependently an optionally substituted moiety selected from alkyl,alkenyl, alkynyl, cycloalkyl, cycloalkyl-alkyl, heterocycloalkyl,heterocycloalkyl-alkyl, aryl, aralkyl, heteroaryl, heteroaralkyl; n is 0or 1; each B and C is an optionally substituted amino acid moiety; and wis 0, 1, or 2; or a pharmaceutically acceptable salt thereof or solvateof the foregoing.

In some of these embodiments of the compound of formula V, VI, or VII, Ais —SO₃H, —SO₂R⁹, —SO₂N(R¹⁰)(R¹¹), or —PO₃H₂. In some embodiments, A is—SO₃H, —SO₂R⁹, —SO₂N(R¹⁰)(R¹¹), —PO₃H₂, or —C(O)NHOH. In someembodiments, A is —SO₃H or —PO₃H₂. In some embodiments, A is —PO₃H₂ or—PO₃H₂. In some embodiments, A is —PO₃H₂. In some embodiments, A is—PO₄H₂. In some embodiments, A is —SO₃H.

In some of these embodiments of the compound of formula V, VI, or VII, Yis S. In some embodiments, Y is O.

In some of these embodiments of the compound of formula V, VI, or VII, nis 1. In some embodiments, n is 0.

In some of these embodiments of the compound of formula V, VI, or VII,each R¹ is independently hydrogen, —C(O)R¹², —OH, or an optionallysubstituted alkyl. In some embodiments, each R¹ is independentlyhydrogen or —C(O)R¹². In some embodiments, R¹ is hydrogen. In someembodiments, R¹ is —C(O)R¹². In some embodiments, each R¹² isindependently hydrogen, or an optionally substituted alkyl. In someembodiments, R¹² is hydrogen.

In some of these embodiments of the compound of formula V, VI, or VII,R¹ is —(B)_(w)—C. In some embodiments, the B moiety attached to R¹ islinked through an amide bond. In some embodiments, each B and C moietyis attached to its adjacent B or C moiety through an amide bond. In someembodiments, at least one B or C is an optionally substituted aliphaticamino acid moiety (e.g., glycine, valine, alanine, leucine, andisoleucine). In some embodiments, each B and C is an optionallysubstituted aliphatic amino acid moiety (e.g., glycine, valine, alanine,leucine, and isoleucine). In some embodiments, each B and C is selectedfrom glycine and valine. In some embodiments, R¹ is selected from thegroup consisting of

In some of these embodiments, R² is H. In some embodiments, R¹ is

and R² is H. In some of these embodiments, w is 0. In some embodiments,w is 1. In other embodiments, w is 2. In some embodiments, at least oneB or C amino acid is in the D form. In some embodiments, at least one Bor C amino acid is in the L form. In some embodiments, each B and Camino acid is in the D form. In some embodiments, each B and C aminoacid (e.g., gly-gly-) is in the L form.

In some of these embodiments of the compound of formula V, VI, or VII,each R³, R⁴, R⁵, R⁶, R⁷, and R⁸ is independently hydrogen, halogen(e.g., Cl, F, I, Br), optionally substituted alkyl, or —OR¹³. In someembodiments, each R³, R⁴, R⁵, R⁶, R⁷, and R⁸ is independently hydrogen,halogen (e.g., Cl, F, I, Br), or alkyl optionally substituted with oneor more halogen groups (e.g., Cl, F, I, Br). In some embodiments, R³,R⁴, R⁵, R⁶, R⁷, and R⁸ are hydrogen. In some embodiments, at least oneof R⁵, R⁶, R⁷, or R⁸ is an optionally substituted alkyl (e.g., alkyloptionally substituted with one or more halogen groups). In someembodiments, one of R⁵, R⁶, R⁷, or R⁸ is an optionally substituted alkyl(e.g., alkyl optionally substituted with one or more halogen groups) andthe others of R⁵, R⁶, R⁷, or R⁸ are hydrogen. In some embodiments, theoptionally substituted alkyl is a methyl or ethyl group optionallysubstituted with one or more halogen groups (e.g., —CF₃, —CH₂CF₃).

In some of these embodiments of the compound of formula V, VI, or VII,R⁷ is independently an optionally substituted moiety selected fromalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkyl-alkyl, heterocycloalkyl,heterocycloalkyl-alkyl, aryl, aralkyl, heteroaryl, and heteroaralkyl. Insome embodiments, each R⁷ is independently hydrogen or an optionallysubstituted alkyl (e.g., optionally substituted with halogen). In someembodiments, each R⁷ is independently an optionally substituted alkyl(e.g., —CF₃, —CH₂CF₃). In some embodiments, R⁷ is an alkyl. In someembodiments, R⁷ is a C₁-C₅ alkyl. In some embodiments, each R⁷ isindependently methyl or ethyl (or an optionally substituted methyl orethyl). In some embodiments, R⁷ is methyl.

In some embodiments of the compound of formula V, VI, or VII, R¹ isindependently hydrogen or —C(O)H; R² is H; each R³, R⁴, R⁵, R⁶, and R⁷is independently hydrogen or halogen (e.g., Cl, F, I, Br); R⁸ ishydrogen, or an optionally substituted moiety selected from alkyl,cycloalkyl, cycloalkyl-alkyl, heterocycloalkyl, heterocycloalkyl-alkyl,aryl, aralkyl, heteroaryl, and heteroaralkyl; or a pharmaceuticallyacceptable salt thereof or solvate of the foregoing. In some of theseembodiments, A is —SO₃H, —PO₃H₂, or —C(O)NHOH, and t is 0. In some ofthese embodiments, A is —SO₃H, —PO₃H₂, or —C(O)NHOH, and t is 1. In someof these embodiments, Y is S. In some embodiments, Y is O.

In some embodiments of the compound of formula V, VI, or VII, R¹ isindependently hydrogen or —C(O)H; R² is H; each R³, R⁴, R⁵, R⁶, and R⁷is independently hydrogen or halogen (e.g., Cl, F, I, Br); and R⁸ ishydrogen or an optionally substituted alkyl (e.g., methyl or ethyl); ora pharmaceutically acceptable salt thereof or solvate of the foregoing.In some of these embodiments, A is —SO₃H, —PO₃H₂, or —C(O)NHOH, and t is0. In some of these embodiments, A is —SO₃H, —PO₃H₂, or —C(O)NHOH, and tis 1. In some of these embodiments, Y is S. In some embodiments, Y is O.

In some embodiments of the compound of formula V; VI, or VII, R¹ isindependently hydrogen or —C(O)H; R² is H; each R³, R⁴, R⁵, R⁶, and R⁷is independently hydrogen or halogen (e.g., Cl, F, I, Br); R⁸ ishydrogen or an optionally substituted alkyl (e.g., methyl or ethyl,optionally substituted with one or more halogen groups); A is —SO₃H, andt is 1; or a pharmaceutically acceptable salt thereof or solvate of theforegoing. In some embodiments, R¹ is independently hydrogen or —C(O)H;R² is H; each R³, R⁴, R⁵, R⁶, and R⁷ is independently hydrogen orhalogen (e.g., Cl, F, I, Br); R⁸ is hydrogen or an optionallysubstituted alkyl (e.g., methyl or ethyl, optionally substituted withone or more halogen groups); A is-PO₃H₂, and t is 1; or apharmaceutically acceptable salt thereof or solvate of the foregoing.

In some embodiments, the compound of formula (V) is the compound:

(V-A): 2-amino-6-methyltetrahydro-2H-thiopyran-4-sulfonic acid;

(V-B): 2-amino-6-(trifluoromethyl)tetrahydro-2H-thiopyran-4-sulfonicacid;

(V-C): 2-amino-6-methyltetrahydro-2H-thiopyran-4-ylphosphonic acid;

(V-D): 2-amino-6-(trifluoromethyl)tetrahydro-2H-thiopyran-4-ylphosphonicacid;

or a pharmaceutically acceptable salt thereof or solvate of theforegoing.

In some embodiments, the compound of formula (VI) is the compound:

(VI-A): 5-amino-2-ethyltetrahydro-2H-thiopyran-3-sulfonic acid;

(VI-B):5-amino-2-(2,2,2-trifluoroethyl)tetrahydro-2H-thiopyran-3-sulfonic acid;

(VI-C): 5-amino-2-ethyltetrahydro-2H-thiopyran-3-ylphosphonic acid;

(VI-D):5-amino-2-(2,2,2-trifluoroethyl)tetrahydro-2H-thiopyran-3-ylphosphonicacid;

(VI-E): 5-amino-2-methyltetrahydro-2H-thiopyran-3-ylphosphonic acid;

or a pharmaceutically acceptable salt thereof or solvate of theforegoing.

In some embodiments, the compound of formula (VII) is the compound:

(VII-A): 4-amino-6-methyltetrahydro-2H-thiopyran-2-sulfonic acid;

(VII-B): 4-amino-6-(trifluoromethyl)tetrahydro-2H-thiopyran-2-sulfonicacid;

(VII-C): 4-amino-6-methyltetrahydro-2H-thiopyran-2-ylphosphonic acid;

(VII-D):4-amino-6-(trifluoromethyl)tetrahydro-2H-thiopyran-2-ylphosphonic acid;

or a pharmaceutically acceptable salt thereof or solvate of theforegoing.

In some embodiments, the analogs described herein (e.g., any compound offormula I, II, III, IV, V, VI, or VII) is in substantially pure form.Unless otherwise stated, “substantially pure” intends a preparation ofthe analog that contains no more than 15% impurity, wherein the impurityintends compounds other than the analog, but does not include otherforms of the analog (e.g., different salt form or a differentstereoisomer, conformer, rotamer, or tautomer of the analog depicted).In one variation, a preparation of substantially pure analog is providedwherein the preparation contains no more than 25% impurity, or no morethan 20% impurity, or no more than 10% impurity, or no more than 5%impurity, or no more than 3% impurity, or no more than 1% impurity, orno more than 0.5% impurity.

The analogs described herein (e.g., any compound of formula I, II, III,IV, V, VI, or VII) and methods of using the same, unless otherwisestated, include all solvate and/or hydrate forms. In some embodiments,the analogs described herein can exist in unsolvated forms as well assolvated forms (i.e., solvates). The analogs may also include hydratedforms (i.e., hydrates).

The analogs described herein (e.g., any compound of formula I, II, III,IV, V, VI, or VII), as well as methods of using such salts of theanalogs, unless otherwise stated, include all salt forms of the analogs.The analogs also include all non-salt forms of any salt of an analogdescribed herein, as well as other salts of any salt of an analogdescribed herein. In some embodiments, the salts of the analogs arepharmaceutically acceptable salts. “Pharmaceutically acceptable salts”are those salts which retain the biological activity and which can beadministered as drugs or pharmaceuticals to and individual (e.g., ahuman). The desired salt of a basic functional group of a compound maybe prepared by methods known to those of skill in the art by treatingthe compound with an acid. The desired salt of an acidic functionalgroup of a compound can be prepared by methods known to those of skillin the art by treating the compound with a base. Examples of inorganicsalts of acid compounds include, but are not limited to, alkali metaland alkaline earth salts, such as sodium salts, potassium salts,magnesium salts, bismuth salts, and calcium salts; ammonium salts; andaluminum salts. Examples of organic salts of acid compounds include, butare not limited to, procaine, dibenzylamine, N-ethylpiperidine,N,N′-dibenzylethylenediamine, trimethylamine, and triethylamine salts.Examples of inorganic salts of base compounds include, but are notlimited to, hydrochloride and hydrobromide salts. Examples of organicsalts of base compounds include, but are not limited to, tartrate,citrate, maleate, fumarate, and succinate.

Unless stereochemistry is explicitly indicated in a chemical structureor chemical name, the chemical structure or chemical name is intended toembrace all possible stereoisomers, conformers, rotamers, and tautomersof the analogs depicted. For example, an analog containing a chiralcarbon atom is intended to embrace both the (R) enantiomer and the (S)enantiomer, as well as mixtures of enantiomers, including racemicmixtures; and a compound containing two chiral carbons is intended toembrace all enantiomers and diastereomers (including (R,R), (S,S),(R,S), and (R,S) isomers). In some embodiments, an analog describedherein (e.g., any compound of formula I, II, III, IV, V, VI, or VII) isin the form of the (R) enantiomer. In some embodiments, an analogdescribed herein (e.g., any compound of formula I, II, III, IV, V, VI,or VII) is in the form of the (S) enantiomer.

Included in all uses of the analogs disclosed herein, is any or all ofthe stereochemical, enantiomeric, diastereomeric, conformational,rotomeric, tautomeric, solvate, hydrate, salt, and pharmaceuticallyacceptable salt of the analogs as described.

Synthetic Methods

The analogs described may be prepared using the teachings herein, aswell as with certain methods known in the art (e.g., Suchata Jinachitraand A. J. MacLeod 1978: A synthesis of alpha-Aminosulphonic Acids.Tetrahedron Vol. 35: 1315-1316). The discussion below is offered toillustrate certain methods for use in assembling the analogs and is notintended to limit the scope of the reactions or reaction sequencesand/or conditions that are useful in preparing the analogs.

Some target analogs described herein may be synthesized by starting witha Boc-protected aminoalcohol, as shown below in Scheme I. The alcohol isconverted to the mesylate ester by treatment with methanesulfonylchloride in the presence of a base (e.g., an amine, such astriethylamine) in a suitable solvent (e.g., dichloromethane).Alternatively, the mesylate ester is generated from the alcohol bytreatment with methanesulfonic anhydride in the presence of base. Themesylate is then converted to the Boc-protected sulfonic acid bytreatment with sodium sulphate in a suitable solvent (e.g., aco-solvent, such as ethanol/water), then deprotected using a strong acid(e.g., hydrochloric acid) to provide the desired analog.

Certain analogs may be further coupled to one or more amino acidmoieties (e.g., a glycine) as exemplified for the synthesis of(S)-2-(2-aminoacetamido)-4-(methylthio)butane-1-sulfonic acid shown inScheme II. An unprotected amine of a methionine analog (e.g., sodium(S)-2-amino-4-(methylthio)butane-1-sulfonate as described above inScheme I) may be coupled in a suitable solvent in the presence of baseto the desired monomer (or dimer, trimer, etc., as appropriate), whereinthe amino acid carboxylate is activated (e.g., as a succinimidyl ester).

Some target analogs comprising a formamide moiety as described hereinmay be synthesized by starting with an unprotected, natural or unnaturalamino acid, as shown below in Scheme III.

The primary amine is formylated by treatment with formic acid in thepresence of acetic anhydride. The carboxylate is then converted to themethyl ester with e.g., (trimethylsilyl)diazomethane, which is thenreduced using any number of standard reducing agents (e.g., sodiumborohydride). The primary alcohol is converted to the mesylate ester asdescribed above in scheme I, followed by transformation into the bromideby treatment with LiBr. The desired analog is then generated bytreatment with sodium sulphate, as described above.

Some target analogs comprising a hydroxamide moiety as described hereinmay be synthesized by starting with an ester protected analog, as shownbelow in Scheme IV. The primary aminde may be Boc-protected (e.g., usingboc anhydride in a suitable solvent, such as dioxane/H₂O, in thepresence of base, such as Na₂CO₃), then treated with hydroxylamine in asuitable solvent (e.g., dioxane/H₂O). Removal of the Boc protectinggroup provides the desired hydroxamide analog.

As described above, certain analogs may be further coupled to one ormore amino acid moieties (e.g., one or more glycine moieties). Thecoupling of an amino acid may occur at any stage appropriate for thesynthesis of the desired analog product. Scheme V below demonstratesfirst coupling of a boc-protected amino acid glycine to a methionineanalog (e.g., using an appropriate coupling agent such as DCC and a mildbase) followed by hydroxamide formation using treatment withhydroxylamine as described above. Removal of the Boc protecting groupprovides the desired hydroxamide analog.

In one aspect is provided a process for preparing a compound of formula(I):

wherein

A is —SO₃H, —SO₂R⁹, —SO₂N(R¹⁰)(R¹¹), —PO₃H₂, or —C(O)NHOH;

Y is S or O;

R¹ is hydrogen, —C(O)R¹², —(B)_(w)—C, —OH, or an optionally substitutedmoiety selected from alkyl, alkenyl, alkynyl, cycloalkyl,cycloalkyl-alkyl, heterocycloalkyl, heterocycloalkyl-alkyl, aryl,aralkyl, heteroaryl, and heteroaralkyl;

R² is hydrogen, or an optionally substituted moiety selected from alkyl,alkenyl, alkynyl, cycloalkyl, cycloalkyl-alkyl, heterocycloalkyl,heterocycloalkyl-alkyl, aryl, aralkyl, heteroaryl, and heteroaralkyl;

or wherein R¹ and R² are taken together to form an optionallysubstituted 5 or 6-membered heterocyclic ring containing the nitrogen towhich they are attached;

each R³, R⁴, R⁵, R⁶, and R⁷ is independently hydrogen, halogen, —OR¹³,—NO₂, —N(R¹⁴)(R¹⁵), —SO₂R¹⁶, —SO₂N(R¹⁷)(R¹⁸), —SR¹⁹, —C(O)R²⁰,—C(O)OR²¹, —C(O)NHR²², —NHC(O)R²³, —OC(O)R²⁴, —NHC(O)OR²⁵, —NHC(O)NHR²⁶,—OC(O)OR²⁷, —OC(O)NHR²⁸, or an optionally substituted moiety selectedfrom alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkyl-alkyl,heterocycloalkyl, heterocycloalkyl-alkyl, aryl, aralkyl, heteroaryl, andheteroaralkyl;

R⁸, R¹⁰, R¹¹, R¹², R¹³, R¹⁴, R¹⁵, R¹⁷, R¹⁸, R¹⁹, R²⁰, R²¹, R²², R²³,R²⁴, R²⁵, R²⁶, R²⁷, and R²⁸ are independently hydrogen, or an optionallysubstituted moiety selected from alkyl, alkenyl, alkynyl, cycloalkyl,cycloalkyl-alkyl, heterocycloalkyl, heterocycloalkyl-alkyl, aryl,aralkyl, heteroaryl, and heteroaralkyl;

R⁹ and R¹⁶ are independently an optionally substituted moiety selectedfrom alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkyl-alkyl,heterocycloalkyl, heterocycloalkyl-alkyl, aryl, aralkyl, heteroaryl,heteroaralkyl;

m, n, and p are independently 0, 1, 2, 3, or 4;

each B and C is an optionally substituted amino acid moiety; and

w is 0, 1, or 2;

or a pharmaceutically acceptable salt thereof or solvate of theforegoing;

comprising(a) reacting a compound of formula SI-A:

-   -   wherein, R¹, R², R³, R⁴, R⁵, R⁶, R⁷, R⁸, p, and n are as defined        above; or a pharmaceutically acceptable salt thereof or solvate        of the foregoing;        and a MsCl or methanesulfonic anhydride in a suitable solvent to        form a compound of SI-B:

-   -   wherein, R¹, R², R³, R⁴, R⁵, R⁶, R⁷, R⁸, p, and n are as defined        above; or a pharmaceutically acceptable salt thereof or solvate        of the foregoing; and        (b) reacting the compound of formula SI-B with X-A in a suitable        solvent, wherein X is one or more cationic groups and A is as        defined above.

In some embodiments of step (a) for the process for preparing a compoundof formula I, compound SI-A is reacted with MsCl in a suitable solvent(e.g., THF or a chlorinated solvent, such as dichloromethane) in thepresence of a base (e.g., an amine base, such as triethylamine). In someembodiments of step (b) for the process for preparing a compound offormula I, compound SI-B is reacted with X-A, wherein X is a alkaline oralkaline earth metal (e.g., Na⁺, K⁺, or Ca²⁺) in a suitable solvent(e.g., an alcohol, such as EtOH). In some embodiments, X-A is Na₂SO₃. Insome embodiments, the process comprises (e.g., following step (a))forming the intermediate compound SI-A2:

-   -   wherein, R¹, R², R³, R⁴, R⁵, R⁶, R⁷, R⁸, p, and n are as defined        above; or a pharmaceutically acceptable salt thereof or solvate        of the foregoing;        prior to forming compound SI-B. In some embodiments, the        intermediate compound SI-A2 is formed following the addition of        a brominating agent (e.g., LiBr).

Process for Preparing a Compound of Formula (I)

The compound of formula (I) shown in the process for preparing acompound of formula (I) may include any one or more of the embodimentsdescribed herein for formula (I), including any one or more provisos ofdescribed formula (I).

Formulations

The analogs described herein (e.g., any compound of formula I, II, III,IV, V, VI, or VII) may be used in the preparation of a formulation, suchas a pharmaceutical composition or formulation, by combining theanalog(s) described with a pharmaceutical acceptable carrier,excipients, stabilizing agents and/or other agents, which are known inthe art, for use in the methods of treatment, methods of administration,and dosage regimes described herein. The formulations may vary or betailored according to the condition to be treated, the amount ofcompound to be administered, the condition of the individual, and othervariables that will readily be apparent to one of ordinary skill in theart in view of the teachings provided herein. The analogs may beformulated, for example, as a solid, semi-solid, and liquid dosageforms, such as tablets, pills, powders, liquid solutions, aerosols, orsuspensions, suppositories, injectable and infusible solutions, foams,gels, and sprays. The preferred form depends on the intended mode ofadministration and therapeutic application. The following formulations,additives, and methods are merely exemplary and are in no way limiting.

Additives used with the analogs described herein (e.g., any compound offormula I, II, III, IV, V, VI, or VII) include, for example, one or moreexcipients (e.g., one or more excipients), antioxidants (e.g., one ormore antioxidants), stabilizers (e.g., one or more stabilizers),preservatives (e.g., one or more preservatives), pH adjusting andbuffering agents (e.g., one or more pH adjusting and/or bufferingagents), tonicity adjusting agents (e.g., one or more tonicity adjustingagents), thickening agents (e.g., one or more thickening agents),suspending agents (e.g., one or more suspending agents), binding agents(e.g., one or more binding agents, viscosity-increasing agents (e.g.,one or more viscosity-increasing agents), and the like, either alone ortogether with one or more additional pharmaceutical agents, providedthat the additional components are pharmaceutically acceptable for theparticular condition to be treated (e.g., an infection). In someembodiments, the formulation may include combinations of two or more ofthe additional components as described herein (e.g., 2, 3, 4, 5, 6, 7,8, or more additional components). In some embodiments, the additivesinclude processing agents and drug delivery modifiers and enhancers,such as, for example, calcium phosphate, magnesium stearate, talc,monosaccharides, disaccharides, starch, gelatin, cellulose, methylcellulose, sodium carboxymethyl cellulose, dextrose,hydroxypropyl-3-cyclodextrin, polyvinylpyrrolidinone, low melting waxes,ion exchange resins, and the like, as well as combinations of any two ormore thereof. Other suitable pharmaceutically acceptable excipients aredescribed in REMINGTON'S PHARMACEUTICAL SCIENCES, Marck Pub. Co., NewJersey 18^(th) edition (1996), and REMINGTON: THE SCIENCE AND PRACTICEOF PHARMACY, Lippincott Williams & Wilkins, Philadelphia, 20^(th)edition (2003) and 21^(st) edition (2005), the contents of which arehereby incorporated by reference in their entireties.

Formulations suitable for oral administration may comprise, for example,(a) liquid solutions, such as an effective amount of the compounddissolved in diluents, such as water, saline, or orange juice, (b)capsules, sachets or tablets, each containing a predetermined amount ofthe active ingredient, as solids or granules, (c) suspensions in anappropriate liquid, (d) suitable emulsions, and (e) powders. Tabletforms can include one or more of lactose, mannitol, corn starch, potatostarch, microcrystalline cellulose, acacia, gelatin, colloidal silicondioxide, croscarmellose sodium, talc, magnesium stearate, stearic acid,and other excipients, colorants, diluents, buffering agents, moisteningagents, preservatives, flavoring agents, and pharmacologicallycompatible excipients. Lozenge forms can comprise the active ingredientin a flavor, usually sucrose and acacia or tragacanth, as well aspastilles comprising the active ingredient in an inert base, such asgelatin and glycerin, or sucrose and acacia, emulsions, gels, and thelike containing, in addition to the active ingredient, such excipientsas are known in the art.

The analogs can be enclosed in a hard or soft capsule, can be compressedinto tablets, or can be incorporated with beverages or food or otherwiseincorporated into the diet. Capsules can be formulated by mixing theanalog with an inert pharmaceutical diluent and inserting the mixtureinto a hard gelatin capsule of the appropriate size. If soft capsulesare desired, a slurry of the analog with an acceptable vegetable oil,light petroleum or other inert oil can be encapsulated by machine into agelatin capsule.

Formulations suitable for parenteral administration include aqueous andnon-aqueous, isotonic sterile injection solutions, which can containanti-oxidants, buffers, bacteriostats, and solutes that render theformulation compatible with the blood of the intended recipient, andaqueous and non-aqueous sterile suspensions that can include suspendingagents, solubilizers, thickening agents, stabilizing agents, andpreservatives. The formulations can be presented in unit-dose ormulti-dose sealed containers, such as ampules and vials, and can bestored in a freeze-dried (lyophilized) condition requiring only theaddition of the sterile liquid excipient methods of treatment, methodsof administration, and dosage regimes described herein (i.e., water) forinjection, immediately prior to use. Extemporaneous injection solutionsand suspensions can be prepared from sterile powders, granules, andtablets of the kind previously described.

Formulation of the analog(s) in liquid form (for oral administration,parenteral administration, or otherwise) may have a pH in the range ofabout 4.5 to about 9.0, including for example pH ranges of any of about5.0 to about 8.0, about 6.5 to about 7.5, and about 6.5 to about 7.0. Insome embodiments, the pH of the formulation is formulated to no lessthan about 6, including for example no less than about any of 6.5, 7, or8 (e.g., about 8). The formulation can also be made to be isotonic withblood by the addition of a suitable tonicity modifier, such as glycerol.

The analogs may also be formulated for administration by inhalation.Formulations suitable for aerosol administration which comprise theanalog may include, for example, aqueous and non-aqueous, isotonicsterile solutions, which can contain anti-oxidants, buffers,bacteriostats, and solutes, as well as aqueous and non-aqueous sterilesuspensions that can include suspending agents, solubilizers, thickeningagents, stabilizing agents, and preservatives, alone or in combinationwith other suitable components, which can be made into aerosolformulations to be administered via inhalation. These aerosolformulations can be placed into pressurized acceptable propellants, suchas dichlorodifluoromethane, propane, nitrogen, and the like. They alsocan be formulated as pharmaceuticals for non-pressured preparations,such as in a nebulizer or an atomizer.

The analogs may also be formulated for topical administration,especially when the target of treatment includes areas or organs readilyaccessible by topical application, including diseases of the eye, theskin, or the lower intestinal tract. Suitable topical formulations arereadily prepared for each of these areas or organs.

Topical application for the lower intestinal tract can be effected in arectal suppository formulation (see above) or in a suitable enemaformulation. Topically-transdermal patches or impregnated sutures mayalso be used.

Also provided are unit dosage forms comprising the formulationsdescribed herein. These unit dosage forms can be stored in a suitablepackaging in single or multiple unit dosages and may also be furthersterilized and sealed. For example, the pharmaceutical formulation(e.g., a dosage or unit dosage form of a pharmaceutical formulation) mayinclude (i) an analog (e.g., any compound of formula I, II, III, IV, V,VI, or VII) and (ii) a pharmaceutically acceptable carrier. In someembodiments, the pharmaceutical formulation also includes one or moreother compounds (or pharmaceutically acceptable salts thereof) that areuseful for treating an infection. In various variations, the amount ofanalog in the formulation is included in any of the following ranges:about 5 to about 50 mg, about 20 to about 50 mg, about 50 to about 100mg, about 100 to about 125 mg, about 125 to about 150 mg, about 150 toabout 175 mg, about 175 to about 200 mg, about 200 to about 225 mg,about 225 to about 250 mg, about 250 to about 300 mg, about 300 to about350 mg, about 350 to about 400 mg, about 400 to about 450 mg, or about450 to about 500 mg. In some embodiments, the amount of analog in theformulation (e.g., a dosage or unit dosage form) is in the range ofabout 5 mg to about 500 mg, such as about 30 mg to about 300 mg or about50 mg to about 200 mg, of the analog. In some embodiments, the carrieris suitable for parental administration (e.g., intravenousadministration). In some embodiments, the analog is the onlypharmaceutically active agent for the treatment of an infection that iscontained in the formulation.

In some embodiments, are provided dosage forms (e.g., a unit dosageform) for the treatment of an infection comprising (i) an analogdescribed herein (e.g., any compound of formula I, II, III, IV, V, VI,or VII), wherein the amount of analog in the unit dosage from is in therange of about 1 mg to about 500 mg, and (ii) a pharmaceuticallyacceptable carrier. In some embodiments, the amount of analog in theunit dosage form includes about 10 mg to about 100 mg.

Kits

Also provided are kits containing materials useful for the treatment ofa condition described herein (e.g., an infection). The kits may containan analog described herein (e.g., any compound of formula I, II, III,IV, V, VI, or VII) and optionally contain instructions for use (e.g.,instructions for preparation and/or administration of a formulationcomprising an analog). Information detailing possible side effects ofthe formulation, and any other relevant information may also beenclosed. The instructions may be in any suitable format, including, butnot limited to, printed matter, videotape, computer readable disk,optical disc or directions to internet-based instructions.

In one aspect, is provided a kit for treating an individual who suffersfrom or is susceptible to a condition described herein, comprising afirst container comprising a dosage amount of a formulation as disclosedherein, and instructions for use. The container may be any of thoseknown in the art and appropriate for storage and delivery of theformulation. In certain embodiments the kit further comprises a secondcontainer comprising a pharmaceutically acceptable carrier, diluent,adjuvant, etc. for preparation of the formulation to be administered tothe individual.

In some embodiments, the kits comprise a container with a label.Suitable containers include, for example, bottles, vials, and testtubes. The containers may be formed from a variety of materials such asglass or plastic. The containers may hold an analog described herein ora formulation of an analog (e.g., a formulation comprising an analog andfurther comprising one or more additional pharmaceutical agents). Thelabel on the container may indicate that the analog or the formulationis used for treating or suppressing a condition described herein (e.g.,an infection), and may also indicate directions for either in vivo or invitro use, such as those described herein.

The kit may further include other materials desirable from a commercialand user standpoint, including other buffers, diluents, filters,needles, syringes, and/or package inserts with instructions forperforming any methods described herein. In some embodiments, the kitcomprises the container described above and a second containercomprising a buffer.

The kits may include additional pharmaceutical agents for use inconjunction with the formulation described herein. In some variations,the additional pharmaceutical agent(s) may be one or more antibacterialagents. These agents may be provided in a separate form, or mixed withthe analogs described herein, provided such mixing does not reduce theeffectiveness of either the pharmaceutical agent or formulationdescribed herein and is compatible with the route of administration.Similarly the kits may include additional agents for adjunctive therapyor other agents known to the skilled artisan as effective in thetreatment or prevention of the conditions described herein.

Kits may also be provided that contain sufficient dosages of thecompounds described herein (including formulations thereof) to provideeffective treatment for an individual for an extended period, such as1-3 days, 1-5 days, a week, 2 weeks, 3, weeks, 4 weeks, 6 weeks, 8weeks, 3 months, 4 months, 5 months, 6 months, 7 months, 8 months, 9months or more.

The kits may include the formulation as described herein packaged ineither a single unit dosage form or in a multi-use form. The kits mayalso include multiple units of the unit dose form. The kits may be usedfor any of the methods described herein, including, for example, totreat an individual with an infection. In certain embodiments, the kitsmay include a dosage amount of at least one formulation as disclosedherein. Kits may also comprise a means for the delivery of theformulation thereof.

Methods of Use

The analogs described herein (e.g., any compound of formula I, II, III,IV, V, VI, or VII) may be capable of treating one or more conditionsresponsive the analogs (e.g., an infection). In some embodiments areprovided methods of treating an infection in an individual, comprisingadministering to the individual an effective amount of an analogdescribed herein (e.g., any compound of formula I, II, III, IV, V, VI,or VII). Infections may include, for example, one or more of bacterial,sporal, fungal, and viral. In some embodiments, the infection does notinclude viral.

Examples of bacteria and bacterial infections that may be responsive tothe analogs and/or applicable with the methods described herein include,but are not limited to, Escherichia coli, Pseudomonas aeruginosa,Staphylococcus aureus, Staphylococcus aureus (MSRA), Serratiamarcescens, Helicobacter pylori, Saccharomyces cerevisiae, Streptococcusthermophilus, Lactococcus lactis, Streptococcus agalactiae, BetaHemolytic streptococcus, Mycobacterium bovis, Listeria monocytogenes,Peptostreptococcus micros, Fusobacterium nucleatum, Porphyromonasgingivalis, Salmonella typhimurium, and/or Bacciluss subtillus, whichmay infect, for example, wounds, skin, eyes, ears, nose, and/or the GItract. Examples of spores and sporal infections that may be applicablewith methods described herein include, but are not limited to,Clostridium, Bacilli and anthrax. Examples of fungus and fungalinfections that may be applicable with methods described herein include,but are not limited to, skin, wound and nail pathogens (e.g.,Onycomycosis). Examples of viruses and viral infections that may beapplicable with methods described herein include, but are not limitedto, RNA and DNA viruses, such as Picornoviruses, HSV-1, HSV-2, and HIV.Also contemplated are Candida albicans (yeast) and Aspergillus niger(mold).

In some variations, the individual being treated for a conditiondescribed herein (e.g., an infection) has been identified as having oneor more of the symptoms described herein. Identification of theconditions as described herein by a skilled physician is routine in theart such as routine physical exams or clinical detection (e.g., cultureenrichment, gene amplification, and/or ELISA detection via microscopy,and other imaging techniques, such as X-rays, CAT scans, PET scans andNMR) and may also be suspected by the individual or others, for example,due to fever, chronic wounds, gangrene, abscess development, ulceration,swelling, diarrhea, dehydration, lethargy, vomiting, inflammation, pain,rash development, etc. In some embodiments, the individual has beenidentified as susceptible to one or more of the conditions as describedherein. The susceptibility of an individual may be based on any one ormore of a number of risk factors and/or diagnostic approachesappreciated by the skilled artisan, including, but not limited to,genetic profiling, family history, medical history (e.g., appearance ofrelated conditions), lifestyle or habits.

In some embodiments, the analogs (e.g., any compound of formula I, II,III, IV, V, VI, or VII) and/or formulations used herein are capable ofreducing the severity of one or more symptoms associated with thecondition (e.g., an infection) by at least about any of about 10%, 20%,30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, or 100% compared to thecorresponding symptom in the same individual prior to treatment orcompared to the corresponding symptom in other individuals not receivingthe methods and/or formulations. In some embodiments are providedmethods of reducing the severity of one or more symptoms associated withthe condition (e.g., an infection) by at least about any of about 10%,20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, or 100% compared to thecorresponding symptom in the same individual prior to treatment orcompared to the corresponding symptom in other individuals not receivingthe methods and/or formulations, comprising administering to theindividual an effective amount of an analog described herein (e.g., anycompound of formula I, II, III, IV, V, VI, or VII).

In some embodiment, the analogs described herein (e.g., any compound offormula I, II, III, IV, V, VI, or VII) are capable of inhibiting thegrowth of a microorganism (e.g., bacteria, spore, fungus, or virus). Insome embodiments are provided methods of inhibiting the growth of amicroorganism, comprising contacting the microorganism with an effectiveamount of a compound of an analog described herein (e.g., any compoundof formula I, II, III, IV, V, VI, or VII). In some embodiments, theanalogs described herein (e.g., any compound of formula I, II, III, IV,V, VI, or VII) may be used as bactericidal, antibacterial,anti-infective, antimicrobial, sporicidal, disinfectant, antifungaland/or antiviral agents.

In some embodiments, the analogs described herein (e.g., any compound offormula I, II, III, IV, V, VI, or VII) are capable of inhibiting proteinsynthesis (e.g., in a microorganism). In some embodiments, the analogsare capable of inhibiting protein synthesis by at least about any ofabout 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, or 100% comparedto not receiving the analog. In some embodiments are provided methods ofinhibiting protein synthesis in a microorganism (e.g., bacteria, spore,fungus, or virus), comprising contacting the microorganism with aneffective amount of an analog described herein (e.g., any compound offormula I, II, III, IV, V, VI, or VII). In some of these embodiments,protein synthesis is inhibited by at least about any of about 10%, 20%,30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, or 100% compared to notreceiving the analog.

In some embodiments, the analogs are capable of selectively inhibitingmicrobial protein synthesis (e.g., bacterial) over eukaryotic proteinsynthesis (e.g., by greater than about 10%, 20%, 30%, 40%, 50%, 60%,70%, 80%, 90%, 95%, or 98% selective over eukaryotic protein synthesis).In some embodiments are provided methods of selectively inhibitingmicrobial protein synthesis (e.g., bacteria), over eukaryotic proteinsynthesis (e.g., by greater than about 10%, 20%, 30%, 40%, 50%, 60%,70%, 80%, 90%, 95%, or 98% selective over eukaryotic protein synthesis)comprising contacting the microorganism with an effective amount of ananalog described herein (e.g., any compound of formula I, II, III, IV,V, VI, or VII).

The analogs described herein may exhibit potential inhibitory propertiesof tRNA synthetases (e.g., bacterial aminoacyl-tRNA synthetases, such asmethionyl-tRNA synthetase). In some embodiments, the analogs describedherein (e.g., any compound of formula I, II, III, IV, V, VI, or VII) arecapable of inhibiting a bacterial aminoacyl-tRNA synthetase (e.g.,methionyl-tRNA synthetase). In some embodiments, the analogs are capableof inhibiting bacterial aminoacyl-tRNA synthetase (e.g., methionyl-tRNAsynthetase) by at least about any of about 10%, 20%, 30%, 40%, 50%, 60%,70%, 80%, 90%, 95%, or 100% compared to not receiving the analog. Insome embodiments are provided methods of inhibiting bacterialaminoacyl-tRNA synthetase (e.g., methionyl-tRNA synthetase), comprisingcontacting the enzyme with an effective amount of an analog describedherein (e.g., any compound of formula I, II, III, IV, V, VI, or VII). Insome of these embodiments, bacterial aminoacyl-tRNA synthetase (e.g.,methionyl-tRNA synthetase) is inhibited by at least about any of about10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, or 100% compared tonot receiving the analog. In some of these embodiments, bacterialaminoacyl-tRNA synthetase (e.g., methionyl-tRNA synthetase) is inhibitedwith an analog described herein (e.g., any compound of formula I, II,III, IV, V, VI, or VII) having a K_(i) of less than about 10 mM, or 5mM, 2.5 mM, 1 mM, 750 μM, 500 μM, 250 μM, 100 μM, 75 μM, 50 μM, 25 μM,10 μM, 5 μM, 2 μM, 1 μM, 750 nM, 500 nM, 250 nM, 100 nM, 75 nM, 50 nM,25 nM, 10 nM, 5 nM, 2.5 nM, or 1 nM. Methods used to measure inhibitoryeffects toward bacterial aminoacyl-tRNA synthetases can be found in theExamples section below and, for example, Vaughan M. D., et al.Investigation of Bioisosteric effects on the integration ofsubstrates/inhibitors with the methionyl-tRNA synthetase fromEscherichia coli. Medicinal Chemistry, 2005, 1:227-237, the content ofwhich is hereby incorporated by reference in its entirety.

The analogs described herein (e.g., any compound of formula I, II, III,IV, V, VI, or VII) may exhibit antioxidant properties. In someembodiments, the analogs are capabale of reducing free-radical formation(e.g., NADPH-mediated radical formation). In some embodiments, theanalogs are capabale of reducing free-radical formation (e.g.,NADPH-mediated radical formation) by greater than about 5%, 10%, 15%,20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 75%, 85%, or 95%(e.g., as measured by the formation of reactive oxygen species (ROS)such as described in Erdmann K., et al. L-Methionine Reduces OxidantStress in Endothelial Cells: Role of Heme Oxygenase-1, Ferritin, andNitric Oxide. The AAPS Journal, 2005, 7:E195-E200, the content of whichis hereby incorporated by reference). In some embodiments are providedmethods of reducing free-radical formation (e.g., NADPH-mediated radicalformation) in an individual, comprising administering to the individualan effective amount of an analog described herein (e.g., any compound offormula I, II, III, IV, V, VI, or VII). In some of these embodiments,the reduction in free-radical formation is greater than about 5%, 10%,15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 75%, 85%, or 95%compared to not administering the analog. In some embodiments, theanalogs described herein (e.g., any compound of formula I, II, III, IV,V, VI, or VII) are capable of reducing oxidant levels (e.g., hydrogenperoxide levels, as described in Levine R., et al. Methionine residuesas endogenous antioxidants in proteins. PNAS., 1996, 93:15036-15040, thecontent of which is hereby incorporated by reference). In someembodiments are provided methods of reducing oxidant levels, comprisingcontacting the oxidant with an effective amount of an analog describedherein (e.g., any compound of formula I, II, III, IV, V, VI, or VII). Insome of these embodiments, the oxidant level is reduced by greater thanabout 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%,75%, 85%, or 95%.

The analogs described herein (e.g., any compound of formula I, II, III,IV, V, VI, or VII) and formulations comprising the analogs describedherein, may be useful in any application in which antimicrobialproperties are desirable. Such applications and methods include, withoutlimitation, use of the analogs (e.g., in an effective amount) for thetreatment of wounds, burns, and canker sores; irrigation and/or cleaningof tissue sites (e.g., pre- and post-operative); ophthalmic applications(e.g., in contact lens cleaning solutions or for irrigation of the eyebefore, during, or post ophthalmic surgery); for dermatologicalapplications, psoriasis; and numerous applications which are readilyapparent to one skilled in the art. Applications and methods alsoinclude the use of the analogs described herein (e.g., in an effectiveamount) for the elimination or reduction of pathogens on surfacesincluding medical equipment, instruments, devices or food (withoutlimiting to meat, fruits, vegetables) and food contact surfacesincluding the elimination or reduction of bacterial biofilms. Theanalogs described herein may also be useful as an irrigation solution,for example, during dental, endodontics filling, periodontal, monthwash, toothpaste, impregnated night-gard and ophthalmic procedures, aswell as for pre- and post-operative cleaning of tissue sites, and as agargling solution for treatment of canker sores.

In one aspect, is provided a method for the treatment of various medicalconditions such as promoting wound healing, reduction of pathogens inopen wounds, wound decontamination, ocular disinfection ordecontamination, oral disinfection, antifungal therapy, ophthalmicapplications, reduction of pathogens in pulmonary infections, reductionof pathogens in burns, lavage, reduction of infectious load in organsfor transplantation, reduction of bacterial load in autologous orartificial tissue transplantation, oral disinfection antifungal therapy,treatment of biofilm for cystic fibrosis and related diseases, treatmentof viral infections, treatment of skin diseases, and tissue repair andregeneration, which comprises using an analog described herein (e.g.,any compound of formula I, II, III, IV, V, VI, or VII), for example, byapplying the solution to the site where treatment is required.Non-limiting examples of biofilm that may be treated using the solutionsof the present invention include those cited in the review articleentitled “Is there a role for quorum signals in bacterial biofilms?” byS. Kjelleberg, and S. Molin, PMID: 12057677 (PubMed-indexed forMEDLINE), which is hereby incorporated by reference in its entirety.

The analogs described herein (e.g., any compound of formula I, II, III,IV, V, VI, or VII) and formulations thereof may be effective in reducingbacterial load, thus improving wound healing. The analogs could be welltolerated, improve the granulation of wound tissue, and/or reduce theneed for debridement. In one aspect, is provided a method for thetreatment of a wound in an individual comprising administering aneffective amount of an analog described herein (e.g., any compound offormula I, II, III, IV, V, VI, or VII) or a formulation thereof. Theanalogs described herein and formulations thereof may be used in thetreatment of many different types of wounds, including, withoutlimitation, diabetic ulcers, gangrene, venous ulcers, decubitus ulcers,pressure ulcers, wounds due to bites, acute trauma wounds, surgicalwounds, burns, deep wounds (e.g., wounds which do not respond to usualmedications and locally applied treatments), as an adjunct treatmentwith Vacuum Assisted Wound Closure (V.A.C) devices, and/or prevention ortreatment of infection associated with gun-shot wounds (e.g., formilitary use).

The analogs described herein (e.g., any compound of formula I, II, III,IV, V, VI, or VII) and formulations thereof may be used in methods forwound care as follows: a gauze material or gauze pad is presoaked withsufficient solution containing the analog to saturate it and is thensqueezed to remove excess solution. This removes species present in thegauze which would react with and reduce the effectiveness of thesolution of the invention. The gauze is wetted after this procedure, butnot soaked. Additional solution is then applied to completely wet thegauze, which is then immediately applied to the wound. In thealternative, the gauze may be applied to the wound and then additionalsolution is applied. Typically the wound site is packed with thesolution-soaked gauze, and optionally, a Vaseline gauze can be appliedon top of the packed wound to keep it moist and free of contaminatinggerms. The wound site is then wrapped with wound dressings as isstandard in the art. The analog may also be used to clean a wound bypouring a solution comprising the analog directly on the wound site toremove any necrotic tissue by a mechanical procedure, and also as acleanser or irrigant.

The analogs described herein (e.g., any compound of formula I, II, III,IV, V, VI, or VII) and formulations thereof may be used to treat cankersores (mouth ulcers) or cold sores by rinsing the affected area. In oneaspect, is provided a method for the treatment of a canker sore in anindividual comprising administering an effective amount of an analogdescribed herein (e.g., any compound of formula I, II, III, IV, V, VI,or VII) or a formulation thereof. For example, a solution comprising theanalog can be used by soaking the cold sore 3-4 times a day, each timewith 2-3 applications, and putting the solution in contact with the sorefor 20-30 seconds. The analog may also be used with a mouth rinse fordental and mouth hygiene and to control infection. In this instance, theanalog may be used in a solution form as a gargling solution to fightthroat infection. The solution the analog may be applied with the helpof a cotton swab for more specific areas. The solution can be used onceor several times a day according to a patient's needs and condition.

The analogs described herein (e.g., any compound of formula I, II, III,IV, V, VI, or VII) and formulations thereof may be used in place of asaline solution to remove a foreign body from, to rinse, and/or toirrigate the eyes. In some of these embodiments, the analog is in theform of a physiologically-balanced solution. The analog may also beapplied topically before or after surgery to disinfect an eye andsurrounding tissues. The analog (e.g., in solution form) can be usedonce or several times a day according to a patient's needs andcondition. The solution can be applied by dropping it directly into theeyes as necessary.

The analogs described herein (e.g., any compound of formula I, II, III,IV, V, VI, or VII) and formulations thereof (e.g., aphysiologically-balanced solution comprising the analog) may be used forthe treatment of ocular infection or contamination. In one aspect, isprovided a method for the treatment of ocular infection or contaminationin an individual comprising administering an effective amount of ananalogs described herein (e.g., any compound of formula I, II, III, IV,V, VI, or VII) or a formulation thereof. The analogs may be used as areplacement for silver nitrate in the disinfection of the eyes ofneonates.

The analogs described herein (e.g., any compound of formula I, II, III,IV, V, VI, or VII) and formulations thereof may be used for the cleaningeyes in adults and in pediatrics. For example, various viral infections,bacterial or fungal infections, or pathogenic agents may be effectivelytreated with the solution of the present invention. Non-limitingexamples of pathogenic agents that could be successfully treated withthe solution of the present invention include chlamydia trachomatis,gonorrhea as well as other bacterial, fungal, and viral infections.

The analogs described herein (e.g., any compound of formula I, II, III,IV, V, VI, or VII) and formulations thereof may be used as a means ofensuring that microbes cannot survive in solutions intended for use ininjection, infusion or for use in the eye by incorporation of anappropriate amount of such compound into the solution at the time ofmanufacture.

The analogs described herein (e.g., any compound of formula I, II, III,IV, V, VI, or VII) and formulations thereof may also be used to treatskin that is infected. In one aspect, is provided a method for thetreatment of infected skin in an individual comprising administering aneffective amount of an analog described herein (e.g., any compound offormula I, II, III, IV, V, VI, or VII) or a formulation thereof. In askin of a patient showing medical signs of infection, the analog may beapplied directly to the area of the skin that is infected. After atleast one application of the solution onto the infected skin usingstandard methods of application known in the art, the disinfectiveproperties of the solution may be noted.

The analogs described herein (e.g., any compound of formula I, II, III,IV, V, VI, or VII) may be used to treat topical infections byincorporating them into creams, ointments or lotions for use in suchconditions (e.g., as used with an impregnated toweled or bandage). Suchcreams, ointments, lotions, or gels might be used a broad variety ofskin conditions and may incorporate penetration enhancers in order todeliver the antimicrobial activity of the analog to microbes presentbeneath the outer (epidermis) layers of the skin.

The analogs described herein (e.g., any compound of formula I, II, III,IV, V, VI, or VII) and formulations thereof may be used for thereduction of pathogens in pulmonary infections. For example, variousviral or bacterial and fungal infections may be effectively treated withthe solution of the present invention. In one aspect, is provided amethod for the treatment of a pulmonary infection in an individualcomprising administering an effective amount of an analog describedherein (e.g., any compound of formula I, II, III, IV, V, VI, or VII) ora formulation thereof. Non-limited examples of infections that may beeffectively treated using the solution of the present invention includeanthrax spores present in the lungs, and the reduction of pneumoniacausing bacteria in the lungs, including strep bacteria and the like(e.g., conditions associated with Cystic fibrosis).

The analogs described herein (e.g., any compound of formula I, II, III,IV, V, VI, or VII) and formulations thereof may be used for thetreatment of gynecological infections, such as urinary tract infectionsand the like. In one aspect, is provided a method for the treatment of agynecological infection in an individual comprising administering aneffective amount of an analog described herein (e.g., any compound offormula I, II, III, IV, V, VI, or VII) or a formulation thereof. Forexample, various microorganisms, yeasts (e.g., Monilia, Candidaalbicans, etc), bacterial infections, HSV-2, HIV or other pathogenicagents may be effectively treated with the solution of the presentinvention. Optionally, the application of the analogs can be used withother medications for the treatment of gynecological infections. Forexample, use as a lavage of birth canal in pregnant female patients withsuspected venereal diseases, and potentially as a bathing and cleansingsolution on babies right after birth in the deliver rooms of hospitalsor as disinfectant on catheters and shunt in dialysis room.

Isotonic solutions comprising one or more analogs described herein(e.g., any compound of formula I, II, III, IV, V, VI, or VII) may beused as an irrigant during surgery in order to prevent the developmentof surgical site infections, that frequently lead to prolongedhospitalizations and, occasionally, in death. In one aspect, is provideda method for preventing the development of surgical site infectionscomprising contacting the surgical site with an effective amount of ananalog described herein (e.g., any compound of formula I, II, III, IV,V, VI, or VII) or a formulation thereof. The use of a solutioncomprising an analog described herein in place of saline couldsubstantially reduce the risks of such infections especially in the caseof gastric surgery and of prolonged operations, where the rate ofinfections may be as high as 10%.

The analogs described herein (e.g., any compound of formula I, II, III,IV, V, VI, or VII) and formulations thereof may be used as a means ofsafely and rapidly disinfecting the hands of surgeons and nurses toreduce the risk of transporting infectious agents into an operatingtheatre. Additionally, solution of the present invention may be used toreduce or eliminate the infectious agent from the skin of patients (preand post operative) in the area of a surgical incision.

The analogs described herein (e.g., any compound of formula I, II, III,IV, V, VI, or VII) and formulations thereof may be used for thereduction of pathogens on the surfaces of medical devices (e.g., as alock solution or gel) and/or surgical implements to prevent infection tothe patient on whom the devices and/or implements are used, or in whomthey are implanted. In one aspect, is provided a method for thereduction of pathogens on the surfaces of a medical device or surgicalimplement comprising contacting the device or implement with aneffective amount of an analog described herein (e.g., any compound offormula I, II, III, IV, V, VI, or VII) or a formulation thereof. Theanalogs may also be used for the reduction and/or elimination ofinfections that occur at the entry ports of catheters and shunts thatare particularly prone to such infections.

The analogs described herein (e.g., any compound of formula I, II, III,IV, V, VI, or VII) and formulations thereof may be applied directly orthrough delivery from a device that creates a mist (aerosolization) tothe surfaces of a room, vehicle interior or other such largely confinedspace in order to reduce or eliminate infectious pathogens that may besuspected to be present. In one aspect, is provided a method reduce oreliminate infectious pathogens on a surface comprising contacting thesurface with an effective amount of an analog described herein (e.g.,any compound of formula I, II, III, IV, V, VI, or VII) or a formulationthereof. In such an application, it could be used to decontaminateoperating theaters where infectious pathogens have been detected orrooms, vehicles and other surfaces where biological warfare agents havebeen dispersed.

The analogs described herein (e.g., any compound of formula I, II, III,IV, V, VI, or VII) and formulations thereof may be used for reducingpathogens on food (including, without limitation, meats, fruits andvegetables). In one aspect, is provided for reducing pathogens on foodcomprising contacting the food with an effective amount of an analogdescribed herein (e.g., any compound of formula I, II, III, IV, V, VI,or VII) or a formulation thereof. In some embodiments, the analog isapplied as a wash or mist to the food. In some embodiments, the food isdipped in a solution comprising the analog. The analogs may also beapplied to surfaces and implements used in the preparation of foods toprevent the transfer of pathogens from such surfaces and implements tothe food.

Combination Therapy

The analogs described herein (e.g., any compound of formula I, II, III,IV, V, VI, or VII) may be formulated and/or administered in conjunctionwith one or more additional pharmaceutical agents, as described hereinand as known in the art, including one or more additional pharmaceuticalagents to further reduce the occurrence and/or severity of symptomsand/or clinical manifestations thereof, as well as additionalpharmaceutical agents that treat or prevent the underlying conditions,and/or in conjunction with (e.g., prior to, concurrently with, or after)additional treatment modalities. As used herein, the term “additionaltreatment modality” refers to treatment/prevention of the conditionsdescribed herein without the use of a pharmaceutical agent (e.g.,surgery, abscess incision & drainage, etc.). Where combinations ofpharmaceutical agent(s) and/or additional treatment modality(ies) areused, they may be, independently, administered prior to, concurrentlywith, or after administration of one or more of the analogs (orformulation(s) thereof) as described herein.

The additional pharmaceutical agents (e.g., antibacterial agents)administered with one or more of the analogs described herein (e.g., anyanalog of formula I, II, or III) can be administered at the recommendedmaximum clinical dosage or at lower doses, such as those indicated inthe PHYSICIANS' DESK REFERENCE (PDR) 53rd Edition (1999), or at suchtherapeutically useful amounts as would be known to one of ordinaryskill in the art. Dosage levels of the additional pharmaceutical agentsin the formulations may be varied so as to obtain a desired therapeuticresponse depending on the route of administration, severity of thedisease and the characteristics and response of the patient. Whenadministered as a combination, the analogs described herein can beformulated as separate formulations, which are given at the same time ordifferent times, or the analogs can be given with the additionalpharmaceutical agent as a single formulation.

The optimal combination of one or more additional pharmaceutical agentsand/or one or more additional treatment modalities in conjunction withadministration of the analogs described herein can be determined by anattending physician or veterinarian based on the individual and takinginto consideration the various factors affecting the particularindividual, including those described herein.

Dosing and Methods of Administration

The amount of the analog administered to an individual (such as a human)may vary with the particular formulation, the method of administration,and the particular type of condition being treated, and should besufficient to produce a desirable beneficial effect. The amountadministered in order to achieve an effective amount will depend upon avariety of factors, including, for example, the particular conditionbeing treated, the frequency of administration, the particularformulation being administered, the severity of the condition beingtreated and the age, weight and general health of the individual, theadverse effects experienced by the individual being treated, etc. Apharmaceutical unit dosage chosen may be fabricated and administered toprovide a defined final concentration of drug in the blood, tissues,organs, or other targeted region of the body. Determination of aneffective amount for a given situation can be readily determined byroutine experimentation (e.g., using in vivo animal models) and iswithin the skill and judgment of the ordinary clinician, particularly inview of the teachings provided herein.

In some embodiments, the amount of the analog is effective to result inan objective response (such as a partial response or a completeresponse). In some embodiments, the amount of the analog is sufficientto result in a complete response in the individual. In some embodiments,the amount of the analog is sufficient to result in a partial responsein the individual. In some embodiments, the amount of the analogadministered alone is sufficient to produce an overall response rate(e.g., by decreasing the size reduce the number of microbial cells,inhibiting microbial cell growth and/or killing existing microbialcells, reducing morbidity and/or mortality, and/or relieving to someextent one or more of the symptoms associated with the an infection,such as levels of redness, pain, fever, and inflammation) by more thanany of about 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, or 95% among apopulation of individuals treated with the analog. A complete responsecan be defined as a return to a normal range value of at least 1, 2, 5,10, 15, 20, 28, 60, or 90 days from the pretreatment value.

In some embodiments, the amount of the analog is below the level thatinduces a toxicological effect (i.e., an effect above a clinicallyacceptable level of toxicity) or is at a level where a potential sideeffect can be controlled or tolerated when the analog is administered tothe individual. In some embodiments, the amount of the analog is closeto a maximum tolerated dose (MTD) of the analog following the samedosing regime. In some embodiments, the amount of the analog is morethan about any of 80%, 90%, 95%, or 98% of the MTD.

In some embodiments, the amount of analog (e.g., an analog in aformulation) is included in any of the following ranges: about 0.5 toabout 5 mg, about 5 to about 10 mg, about 10 to about 15 mg, about 15 toabout 20 mg, about 20 to about 25 mg, about 20 to about 50 mg, about 25to about 50 mg, about 50 to about 75 mg, about 50 to about 100 mg, about75 to about 100 mg, about 100 to about 125 mg, about 125 to about 150mg, about 150 to about 175 mg, about 175 to about 200 mg, about 200 toabout 225 mg, about 225 to about 250 mg, about 250 to about 300 mg,about 300 to about 350 mg, about 350 to about 400 mg, about 400 to about450 mg, or about 450 to about 500 mg. In some embodiments, the amount ofanalog in the effective amount of the formulation (e.g., a unit dosageform) is in the range of about 5 mg to about 500 mg, such as about 30 mgto about 300 mg or about 50 mg to about 200 mg.

In some embodiments, the concentration of the analog in the formulationis dilute (about 0.1 mg/mL) or concentrated (about 100 mg/mL), includingfor example any of about 0.1 to about 50 mg/mL, about 0.1 to about 20mg/mL, about 1 to about 10 mg/mL, about 2 mg/mL to about 8 mg/mL, about4 to about 6 mg/mL, about 5 mg/mL. In some embodiments, theconcentration of the analog is at least about any of 0.5 mg/mL, 1.3mg/mL, 1.5 mg/mL, 2 mg/mL, 3 mg/mL, 4 mg/mL, 5 mg/mL, 6 mg/mL, 7 mg/mL,8 mg/mL, 9 mg/mL, 10 mg/mL, 15 mg/mL, 20 mg/mL, 25 mg/mL, 30 mg/mL, 40mg/mL, or 50 mg/mL. In some embodiments, the concentration of the analogin the formulation is about 0.1% to 95%, or 0.1% to 80%, or 0.5% to 70%,or 0.5% to 60%, or 0.5% to 60%, or 0.5% to 50%, or 0.5% to 40%, or 0.5%to 30%, or 0.5% to 25%, or 0.5% to 20%, or 0.5% to 15%, or 0.5% to 10%,or 0.5% to 5%, or 0.1% to 2%, 0.1% to 1%, 0.1% to 0.5%.

Examples of the analog (e.g., any compound of formula I, II, III, IV, V,VI, or VII, alone or in combination with an additional pharmaceuticalagent) which can be used are an effective amount within the dosage rangeof about 0.1 μg/kg to about 300 mg/kg, or within about 1.0 μg/kg toabout 40 mg/kg body weight, or within about 1.0 μg/kg to about 20 mg/kgbody weight, or within about 1.0 μg/kg to about 10 mg/kg body weight, orwithin about 10.0 μg/kg to about 10 mg/kg body weight, or within about100 μg/kg to about 10 mg/kg body weight, or within about 1.0 mg/kg toabout 10 mg/kg body weight, or within about 10 mg/kg to about 100 mg/kgbody weight, or within about 50 mg/kg to about 150 mg/kg body weight, orwithin about 100 mg/kg to about 200 mg/kg body weight, or within about150 mg/kg to about 250 mg/kg body weight, or within about 200 mg/kg toabout 300 mg/kg body weight, or within about 250 mg/kg to about 300mg/kg body weight. Other dosages which can be used are about 0.01 mg/kgbody weight, about 0.1 mg/kg body weight, about 1 mg/kg body weight,about 10 mg/kg body weight, about 20 mg/kg body weight, about 30 mg/kgbody weight, about 40 mg/kg body weight, about 50 mg/kg body weight,about 75 mg/kg body weight, about 100 mg/kg body weight, about 125 mg/kgbody weight, about 150 mg/kg body weight, about 175 mg/kg body weight,about 200 mg/kg body weight, about 225 mg/kg body weight, about 250mg/kg body weight, about 275 mg/kg body weight, or about 300 mg/kg bodyweight.

Exemplary dosing frequencies include, but are not limited to, weeklywithout break; weekly, three out of four weeks; once every three weeks;once every two weeks; weekly, two out of three weeks. In someembodiments, the analog (or formulation thereof) is administered aboutonce every 2 weeks, once every 3 weeks, once every 4 weeks, once every 6weeks, or once every 8 weeks. In some embodiments, the analog isadministered at least about any of 1×, 2×, 3×, 4×, 5×, 6×, or 7× (i.e.,daily) a week. In some embodiments, the intervals between eachadministration are less than about any of 6 months, 3 months, 1 month,20 days, 15, days, 12 days, 10 days, 9 days, 8 days, 7 days, 6 days, 5days, 4 days, 3 days, 2 days, or 1 day. The administration of theanalogs described herein can be extended over an extended period oftime, such as from about a month up to about seven years. In someembodiments, the analog is administered over a period of at least aboutany of 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 18, 24, 30, 36, 48, 60, 72,or 84 months. In some embodiments, there is no break in the dosingschedule. In some embodiments, the interval between each administrationis no more than about a week.

The analogs described herein allow, in some embodiments, infusion of theanalog to an individual over an infusion time that is shorter than about24 hours. For example, in some embodiments, the analog is administeredover an infusion period of less than about any of 24 hours, 12 hours, 8hours, 5 hours, 3 hours, 2 hours, 1 hour, 30 minutes, 20 minutes, or 10minutes. In some embodiments, the analog is administered over aninfusion period of about 30 minutes.

Any of the analogs described herein (e.g., any compound of formula I,II, III, IV, V, VI, or VII) may be administered to an individual (suchas human) via various routes, including, for example, intravenous,intra-arterial, intraperitoneal, intrapulmonary, oral, inhalation,intravesicular, intramuscular, intra-tracheal, subcutaneous,intraocular, intrathecal, transmucosal, and transdermal. In someembodiments, the analog is administered by sustained continuous release.In one variation, the analogs can be administered by any acceptableroute including, but not limited to, orally, intramuscularly,transdermally, intravenously, through an inhaler or other air bornedelivery systems and the like. Additional methods of administration areknown in the art.

In some embodiments, the analogs described herein (e.g., any compound offormula I, II, III, IV, V, VI, or VII) are administered parenterally(e.g., intravenously). In some embodiments are provided methods oftreating a condition (e.g., an infection) comprising parenterally (e.g.,intravenously) administering an analog described herein. Injectablepreparations (for example, sterile injectable aqueous or oleaginoussuspensions) may be formulated according to the known art using suitabledispersing or wetting agents and suspending agents. The sterileinjectable preparation may also be a sterile injectable solution orsuspension in a nontoxic parenterally acceptable diluent or solvent, forexample, as a solution in propylene glycol. The sterile injectablepreparation may also be a sterile powder to be reconstituted usingacceptable vehicles prior to administration. Among the acceptablevehicles and solvents that may be employed are water, Ringer's solution,and isotonic sodium chloride solution. In addition, sterile, fixed oilsare conventionally employed as a solvent or suspending medium. For thispurpose any bland fixed oil may be employed including synthetic mono- ordiglycerides. In addition, fatty acids such as oleic acid may be used inthe preparation of injectables.

In some embodiments, the analogs described herein (or formulationsthereof) are suitable for oral administration. The analogs described fororal use herein can be administered in solid form, in liquid form, inaerosol form, and/or in the form of tablets, pills, powder mixtures,capsules, granules, etc.

Solid dosage forms for oral administration may include capsules,tablets, pills, powders, and granules. In such solid dosage forms, theanalog may be admixed with at least one inert diluent such as sucrose,lactose, or starch. Such dosage forms may also comprise additionalsubstances other than inert diluents, e.g., lubricating agents such asmagnesium stearate. In the case of capsules, tablets, and pills, thedosage forms may also comprise buffering agents. Tablets and pills canadditionally be prepared with enteric coatings.

Liquid dosage forms for oral administration may include pharmaceuticallyacceptable emulsions, solutions, suspensions, syrups, and elixirscontaining inert diluents commonly used in the art, such as water. Suchformulations may also comprise adjuvants, such as wetting agents,emulsifying and suspending agents, cyclodextrins, and sweetening,flavoring, and perfuming agents.

As described herein, the analogs may be administered with an additionaltherapeutic agent and/or an additional treatment modality. The dosingfrequency of the analog and the additional therapeutic agent may beadjusted over the course of the treatment based on the judgment of theadministering physician. In some embodiments, the analog and theadditional therapeutic agent are administered simultaneously,sequentially, or concurrently. When administered separately, the analogand the additional therapeutic agent can be administered at differentdosing frequency or intervals. For example, the analog can beadministered weekly, while the additional therapeutic agent can beadministered more or less frequently. In some embodiments, sustainedcontinuous release formulation of the analog and/or the additionaltherapeutic agent may be used. Various formulations and devices forachieving sustained release are known in the art. A combination of theadministration configurations described herein can be used.

The present invention will be understood more readily by reference tothe following examples, which are provided by way of illustration andare not intended to be limiting of the present invention.

Examples Example 1: Synthesis of(S)-2-amino-4-(methylthio)butane-1-sulfonic acid hydrochloride (HClsalt, S-enantiomer of I-A)

To a solution of(S)-tert-butyl1-hydroxy-4-(methylthio)butan-2-ylcarbamate (1.0 g, 1.0 eq, Chem-Impex,Catalog #03206) in DCM at −25° C. was added triethylamine (2.5 eq),followed by methanesulfonyl chloride (2.0 eq). The mixture was stirredat −25° C. for 1 h and RT for 30 min, washed with 1 N HCl, sat. NaHCO₃and brine, dried and concentrated to give a residue, which was purifiedby flash chromatography column on silica gel using ethyl acetate andhexane (1:2) as eluent to give(S)-2-(tert-butoxycarbonylamino)-4-(methylthio)butyl methanesulfonate(1.1 g, 75%). 1H NMR (CDCl₃, 300 MHz) δ 4.25 (m, 2H, OCH₂), 4.0 (br s,1H, BocNHCH), 3.05 (s, 3H, SO₂CH₃), 2.55 (m, 2H, SCH₂), 2.15 (s, 3H,SCH₃), 1.85 (m, 2H, BocNHCHCH₂CH2S), 1.45 (s, 9H, OC(CH₃)₃).

(S)-2-(tert-butoxycarbonylamino)-4-(methylthio)butyl methanesulfonate(1.1 g, 3.51 mmol, 1.0 eq) was dissolved in EtOH (10 mL) and water (8.0mL). Sodium sulfite (2.21 g, 5.0 eq) was added. The mixture was heatedto reflux for 16 hours, and concentrated. The residue was purified byreversed phase column (Diaion HP-20) using distilled water (200 ml)first, then 10% CH₃CN in water and finally 20% CH₃CN in water to givesodium (S)-2-(tert-butoxycarbonylamino)-4-(methylthio)butane-1-sulfonate(376 mg, 37%). 1H NMR (DMSO-d6, 300 MHz) δ 6.75 (d, 1H, NH), 3.50 (br s,1H, BocNHCH), 2.3-2.5 (m, 4H, SCH₂ and OSCH₂, overlapped with DMSOsolvent peak), 2.0 (s, 3H, SCH₃), 1.8 (m, 1H, NHCHCH₂CH2S), 1.6 (m, 1H,NHCHCH₂CH2S), 1.35 (s, 9H, OC(CH₃)₃). LC-MS: 2.03 min; MS (ESI−) m/z 298(M-Na)⁺, 198 (M-Na-Boc)⁺.

Sodium (S)-2-(tert-butoxycarbonylamino)-4-(methylthio)butane-1-sulfonate(350 mg) was treated with 6 N HCl in water at 40° C. for 1 h. Thereaction mixture was purified on Diaion HP-20 column eluting with water(200 mL), then 20% CH₃CN in water. The fractions were concentrated anddried under vacuum to give (S)-2-amino-4-(methylthio)butane-1-sulfonicacid hydrochloride as a light yellow solid (53 mg, 21%). 1H NMR(DMSO-d6, 300 MHz) δ 8.05 (br s, 3H, NH₃), 3.4 (br s, 1H, NCH), 2.65 (m,4H, SCH₂ and OSCH₂), 2.1 (s, 3H, SCH₃), 1.8-2.1 (m, 2H, NCHCH₂CH₂SCH₃).LC-MS: 0.15 min (eluted along with solvent peak); MS (ESI−) m/z 198(M−1)⁺. Purity: >95% by 1H NMR and LC-MS. The chirality of the finalproduct was based on the commercially available starting material,(S)-tert-butyl 1-hydroxy-4-(methylthio)butan-2-ylcarbamate, which has anatural configuration (L-). The reactions did not change the chiralcenter.

LC conditions: Mobile phase A: 10 mM ammonium acetate in water (pH 5.0);Mobile phase B: acetonitrile; Column: Eclipse-XDB-C18 (2.1×50 mm) at 40°C.; Gradient (1 ml/min); conditions (min, A %, B %): 0:00, 97, 3; 0.25,97, 3; 3:00, 5, 95; 4:50, 5, 95; 4:60, 97, 3.

Example 2: Synthesis of(S)-2-(2-aminoacetamido)-4-(methylthio)butane-1-sulfonic acidhydrochloride (HCl salt, S-enantiomer of I-Z)

(S)-2-(2-aminoacetamido)-4-(methylthio)butane-1-sulfonic acidhydrochloride was synthesized by coupling a 2,5-dioxopyrrolidin-1-yl2-(tert-butoxycarbonylamino)acetate to sodium(S)-2-amino-4-(methylthio)butane-1-sulfonate in the presence of mildbase. The resulting(S)-2-(2-(tert-butoxycarbonylamino)acetamido)-4-(methylthio)butane-1-sulfonicacid was deprotected in the presence of 6M HC_((aq.)) to provide thedesired product. (M+H)⁺=256.9.

Example 3: Synthesis of (S)-2-amino-N-hydroxy-4-(methylthio)butanamidehydrochloride (HCl salt, S-enantiomer of I-AA)

To a solution of (S)-methyl 2-amino-4-(methylthio)butanoate (5 g, 30.7mmol) in dioxane (50 mL) and water (20 mL) at room temperature was addedsodium carbonate (5.3 g, 50 mmol) and boc anhydride (7.96 g, 36.8 mmol).The mixture was stirred overnight at room temperature followed bydioxane removal under vacuum. The aqueous layer was extracted with ethylacetate (3×). The combined organic layers were washed with 1N HCl,brine, and dried over sodium sulfate, filtered and concentrated to givea residue, which was purified on silica gel column to give (S)-methyl2-(tert-butoxycarbonylamino)-4-(methylthio)butanoate (5.1 g, 63%). MScalcd for (C₁₁H₂₁NO₄S+H)⁺: 264.1; MS found: (M+H)⁺=264.1, 164.1 (-Boc).

A solution of (S)-methyl2-(tert-butoxycarbonylamino)-4-(methylthio)butanoate (1 g, 3.8 mmol) indioxane (10 mL) and hydroxylamine (50% in water, 10 mL) was stirred atroom temperature for 2 days. The solution was diluted with ethyl acetate(200 mL). The organic layer was washed with 1N HCl, brine, and driedover sodium sulfate, filtered and concentrated to give a residue, whichwas purified on silica gel column (hexane:ethyl acetate, 1:1 to pureacetate) to give (S)-tert-butyl1-(hydroxyamino)-4-(methylthio)-1-oxobutan-2-ylcarbamate as a whitesolid (0.33 g, 33%). MS calcd for (C₁₀H₂₀N₂O₄S+H)⁺: 265.1; MS found:(M+H)⁺=266.2, 166.2 (-Boc).

To solid (S)-tert-butylL-(hydroxyamino)-4-(methylthio)-1-oxobutan-2-ylcarbamate (0.33 g, 1.25mmol) was added 4 N HCl in dioxane (2 mL, 8 mmol). The mixture wasstirred at room temperature for one hour, and concentrated. The residuewas triturated with ether, and dried to providel-Hydroxycarbamoyl-3-methylsulfanyl-propyl-amine hydrochloride(S)-2-amino-N-hydroxy-4-(methylthio)butanamide hydrochloride (0.18 g,80%). MS calcd for (C₅H₁₂N₂O₂S—H)⁺: 163.1; MS found: (M−H)⁺=163.0Example 4: Synthesis of(S)-2-(2-aminoacetamido)-N-hydroxy-4-(methylthio)butanamidehydrochloride (HCl salt, S-enantiomer of I-AB)

To a solution of (S)-methyl 2-amino-4-(methylthio)butanoate (5 g, 30.7mmol) and Boc-glycine (6.4 g, 36.8 mmol) in dichloromethane (100 mL) atroom temperature was added diisopropylcarbodiimide (4.6 g, 36.8 mmol)and diisopropylethylamine (4.75 g, 36.8 mmol). The mixture was stirredovernight at room temperature, washed with 1N HCl, brine, and dried oversodium sulfate, filtered and concentrated to give a residue, which waspurified on silica gel column to give (S)-methyl12,12-dimethyl-7,10-dioxo-11-oxa-2-thia-6,9-diazatridecane-5-carboxylate(7 g, 71%). MS calcd for (C₁₃H₂₄N₂O₅S+H)⁺: 321.1. MS found:(M+H)⁺=321.2.

A solution of (S)-methyl12,12-dimethyl-7,10-dioxo-11-oxa-2-thia-6,9-diazatridecane-5-carboxylate(7 g, 21 mmol) in dioxane (120 mL) and hydroxylamine (50% in water, 80mL) was stirred at room temperature for 4 hours. The solution wasconcentrated and extracted with ethyl acetate (200 mL). The organiclayers were washed with 1N HCl, brine, and dried over sodium sulfate,filtered and concentrated to give a residue, which was purified onsilica gel column (hexane: ethyl acetate, 1:1 to pure acetate) to give(S)-tert-butyl2-(1-(hydroxyamino)-4-(methylthio)-1-oxobutan-2-ylamino)-2-oxoethylcarbamate(2 g, 28%). MS calcd for (C₁₂H₂N₃OS+H)⁺: 322.1; MS found: (M+H)⁺=322.0.

To (S)-tert-butyl2-(1-(hydroxyamino)-4-(methylthio)-1-oxobutan-2-ylamino)-2-oxoethylcarbamate(200 mg, 0.62 mmol) was added 4N HCl in dioxane (1 mL). The mixture wasstirred at rt for 1 h, concentrated and triturated with ether to give(S)-2-(2-aminoacetamido)-N-hydroxy-4-(methylthio)butanamidehydrochloride as a white solid after drying under vacuum (0.12 g, 75%).MS calcd for (C₇H₁₆N₃O₃S—H)⁺: 220.1; MS found: (M+H)⁺=220.0.

Example 5: Bactericidal Activity

Escherichia coli (ATCC 11229) is diluted in sterile saline to prepareinocula. Various test articles are transferred to individual tubesalready containing 1.0×10⁵ to 2.0×10⁵ Colony Forming Units (CFU)/mLbacteria and mixed by gentle vortexing and then incubated at 37° C. for1 or 24 hours. Bacterial plating in a Petri dish is performedimmediately after the designated exposure time without the addition of aneutralizer, and independently with addition of neutralizer (ascontrol). Thus, 0.1 mL is removed after 1 or 24 hours exposure times andplated. Plates are incubated at 37° C., and the numbers of bacteria arecounted by direct colony count to numerate the surviving bacteria asCFU/mL. Positive growth controls are made with sterile 0.9% saline. Alltest articles were tested three times. The results are tabulated to showthe comparison of antimicrobial effectiveness range of 1-24 hr.

Example 6: Bactericidal Activity for Methionine Analogs

Comparative Minimum Bactericidal Concentration (MBC) results provideestimates of the susceptibility of various test articles against testorganisms. A modification of the National Committee Consensus onLaboratory (NCCL) Standardized Protocol “Methods for dilutionantimicrobial susceptibility tests for bacteria that grow aerobically”was used in these studies. Sterile Phosphate Buffer Saline (PBS) at pH7.0 (vehicle) was used as the diluent. Use of such diluent allows forthe determination of the intrinsic activity of our test articles in theabsence of any interfering molecules. Specifically, each test articlewas diluted using 2-fold serial dilution in 96-well plate to give arange of concentrations from approximately 50 mM to 0.05 mM in a finalvolume of 0.1 mL. Each dilution was inoculated with 5×105 CFU/mL testbacteria. The initial optical density as absorbance of each well wasread at OD 550 nm using ThermoMax plate reader. After the initial ODreading co-incubation was carried out at 37° C. temperatures for up to24 hour. At various time intervals post-treatment, OD reading at 550 nmwas recorded at various time intervals. FIG. 1A and Table 1 show timedependent growth inhibition capability of analogs on E. coli at 12.5 mM.

TABLE 1 Growth Inhibition of E. coli by Methionine Analogs Time (hrs)Absorbance Concentration 0 1 2 3 3.75 5 6.5 7.25 23 M9 Control NMF 0.0800.110 0.138 0.148 0.137 0.162 0.173 0.181 0.387 Well 12 12.5 0.085 0.1230.164 0.168 0.151 0.191 0.202 0.202 0.427 Methionine Well 12 12.5 0.0840.113 0.130 0.133 0.109 0.118 0.110 0.100 0.130 (I-AA) Well 12 12.50.085 0.095 0.111 0.104 0.090 0.094 0.090 0.089 0.091 (I-AB)

MBC was determined by plating 5 μL of each sample onto a gridded agarplate (see, for example, FIG. 1B). Plates were then incubated overnightat 37° C., and examined for growth or no growth. The concentration atwhich there was a complete absence of colony growth was determined to bethe MBC.

For FIGS. 1A and 1B, the 96-well plate format was used to culture E.coli (DH5-α) cells in M9 minimal media supplemented with glucose (M9) orsame media supplemented with a range of concentrations of variousanalogs. Experiments were carried out in duplicate. E. coli growth wassignificantly inhibited by the I-AB analog as compared to M9 and otheranalogs. Bacterial growth inhibition was concentration-dependent by I-ABas seen in spot inoculated agar plate (FIG. 1B; absence of re-growth:spot inoculation from well 12, 11 and 10).

Example 7: Broad Spectrum Growth Inhibition by Methionine Analogs

Preliminary in vitro studies demonstrate that the analogs possessantibacterial capabilities. Table 2 and FIG. 2 summarizes a series ofstudies, which were performed to test eradication of bacterial growthusing various species (representative strains of gram positive and gramnegative microorganisms commonly associated with wound infection). A96-well plate format was used to culture different bacteria in M9minimal media supplemented with glucose (M9) or same media supplementedwith a range of concentrations of various analogues (Methionine, I-AAand I-AB). Experiments were carried out in duplicate. In theseexperiments bacterial growth inhibition was concentration-dependent byI-AB (as seen for E. coli in FIGS. 1A and 1B), and most bacteria werekilled within 24 hours, as opposed to continuous growth of each speciesof test bacteria in M9 media (data not shown). These results show thatthe tested analogs eradicated test bacteria quickly (in less than 24 h)as opposed to un-inhibited growth of all bacteria in M9 media (data notshown).

TABLE 2 Broad Spectrum Bacterial Growth Inhibition Data Bacteria WellConc. S. aureus S. epidermids Ps. sturtzeri B. subtillus E. coli P.aeruginosa 4 0.0 0.6 0.7 0.5 0.5 0.4 1.1 5 0.1 0.6 0.7 0.5 0.5 0.4 1.0 60.2 0.5 0.6 0.3 0.4 0.4 1.0 7 0.4 0.5 0.3 0.3 0.4 0.4 1.0 8 0.8 0.5 0.20.2 0.2 0.5 1.0 9 1.6 0.4 0.2 0.2 0.2 0.4 1.0 10 3.1 0.2 0.1 0.2 0.2 0.21.0 11 6.3 0.1 0.1 0.2 0.2 0.2 0.1 12 12.5 0.1 0.1 0.2 0.2 0.2 0.1

Example 8: Cytotoxicity Activity

Cytotoxicity is assessed by a colorimetric assay system (Sagripanti J-L,Bonifacino A. Cytotoxicity of Liquid Disinfectants. Surgical Infections,2000; 1(1): 3-14., the content of which is hereby incorporated byreference, particularly with respect to the experimental methodsdescribed therein), using3′-(phenylamino-carbonyl)-3,4-tetrazo-lium-bis(4-methoxy-6-nitro)benzene sulfonic acid hydrate (XTT), ProCheck™ cell viability assay(Evaluation of a soluble tetrazolium/formazan assay for cell growth anddrug sensitivity in culture using human and other tumor cell linesdescribed by Scudiero D A, Shoemaker R A H, Paul K D, Monks A, TierneyS, Nofziger T H, Currens M J, Seniff D, Boyd M R. Cancer Res. 1988 Sep.1; 48(17):4827-33, the content of which is hereby incorporated byreference, particularly with respect to the experimental methodsdescribed therein). Similar approaches for determining the cellviability are used by other investigators. Three cell types are used:mouse lung epithelial cells (L929), primary human skin fibroblast andprimary human keratinocyte cells cultured in Dulbecco Modified Eagle'sMedium and Keratinocyte defined medium with corresponding growth factorsplus antibiotics. Cells are trypsinized and counted under the microscopeand seeded at 1000-to-2000 cells per well of a flat-bottom 96-wellplate. Cells are allowed to grow overnight at 37° C. Tissue culturemedia is removed the following day and cells are rinsed with fresh media1× and then left in 50 μL of tissue culture media. Test articles areprepared as 2-fold dilutions and 200 μL is added into each set of4-wells (total volume per well is 250 μL). Cells are exposed to testarticles for 60 min at room temperature. Immediately after the exposedtime, test article from each well is removed and cells are fed with 250μL of fresh media. Plates are incubated at 37° C. for 18-20 hr. Thefollowing day media is removed again and replaced with 100 μL/well offresh media containing 10/100 μL XTT-reagent. Cells are incubated undergrowth conditions (5% CO₂ at 37° C. humidified incubator), protectedfrom light, until color development is achieved. Absorbance is read at450 nm with reference wavelength at 750 nm using Molecular DeviceThermoMax Plate reader, blanking the plate on the medium-only assayblank wells. Untreated cells receiving XTT reagents-only serve aspositive cell proliferation control.

Example 9: Cytotoxicity Activity for Methionine Analogs

Preliminary studies of cytotoxicity were performed in a mammalian cellviability assay. While different from the various types of cells foundin skin, the CV-1 (African Green Monkey Kidney Cells) cells are assensitive as L929 cells, and readily available, making them a suitablefor initial cytotoxicity target cells.

CV-1 cells were propagated in DMEM plus 8% FBS according to supplier'srecommendations. CV-1 cells were seeded at 1.5×104 cells per well in96-well plates and incubated overnight at 37° C. On the day of testing,growth medium was aspirated from each well, and 20 μl fresh medium wasadded per well. Test articles were diluted from 50 mM to 0.05 mM by2-fold serial dilution using PBS at pH 7.0 for each test article. Afterwhich 80 μl of each dilution was added to each well for a total volumeof 100 μl per well. Following 60 minutes exposure at 37° C., testarticles were aspirated and replaced with fresh 100 μl tissue culturemedia and incubated for 24 hours at 37° C. Next day cell culture mediawas removed and cell viability was determined by addition of WST-8(Dojindo, Japan) reagent and the absorption at 450 nm readspectrophotometrically. Orange-red formazan, which is produced by livecells, is a direct measure of cell viability in this assay.

Data for methionine analogs are shown in Table 3 and FIG. 3. Thecytotoxicity of the tested analogs, at concentrations similar to thoseused in MBC assays is not toxic to CV-1 cells. At high concentrations(50 mM) cytotoxicity is observed in the cell viability assay. Resultsare expressed as percentage of cells surviving the treatment as comparedto PBS. Cytotoxicity data for methionine analogs using L929 cells areshown in Table 4 and FIG. 4.

TABLE 3 Percentage of Surviving CV-1 cells for methionine analogsrelative to PBS Well Number 3 4 5 6 7 8 9 10 11 12 Concentration (mM)0.1 0.2 0.39 0.78 1.56 3.13 6.25 12.5 25.0 50.0 Methionine 98% 96% 95%96% 99% 100% 100% 99% 99% 66% I-AA 97% 95% 96% 96% 100% 100% 99% 101%99% 72% I-AB 97% 94% 97% 97% 98% 100% 100% 101% 100% 60%

TABLE 4 Percentage of Surviving L929 cells for methionine analogsrelative to control Well Number 3 4 5 6 7 8 9 10 11 12 Concentration(mM) 0.1 0.2 0.39 0.78 1.56 3.13 6.25 12.5 25.0 50.0 Methionine 104%101% 100% 95% 87% 86% 84% 85% 85% 81% I-AA 100% 94% 89% 87% 87% 87% 85%86% 85% 82% I-AB 99% 92% 88% 90% 89% 86% 88% 89% 92% 75% Disinfectant*108% 104% 103% 94% 43% 41% 41% 42% 41% 47% *0.6% bleach in PBS

Example 10: Enzymatic Aminoacylation tRNA Charging Assay

The assay system is as described by Hartman M et al, 2006 Enzymaticaminoacylation of tRNA with unnatural amino acids. PNAS.103(12):4356-4361 (the content of which is hereby incorporated byreference, particularly with respect to the experimental methodsdescribed therein). Each assay contains 40 mM Hepes (pH 7.4), 17 mMMgCl₂, 45 mM KCl, 3.4 mM 2-mercaptoethanol, 6 mM ATP, 6% glycerol, 350μM E. coli tRNA (Roche), 0.09 mg/mL BSA, 910 nM Methionyl-tRNAsynthetase (MetRS) and amino acids in 100-1,000 μM range. The assay isinitiated by addition of the mixture of AARS and incubated at 25-30° C.for 10 minutes. Samples are transferred to ice bath to stop thereactions and then small aliquot (2 μL) samples are precipitated using500 μL of 5% cold TCA onto Whatmann filter papers and vacuumed and thendried under a heat lamp. Radioactivity of each sample is measured ascounts per minute (CPM), as compared to controls (without the analog).Results for the S enantiomer of I-A((S)-2-amino-4-(methylthio)butane-1-sulfonic acid hydrochloride) areshown below in Table 11.

TABLE 11 Pattern of E. coli Methionyl-tRNA synthetase inhibition foranalog I-A Tube Counts Per Minute Number Mix I-A (mM) Volume H₂O 1Minute 10 Minutes Experiment #1 6 15 ul 0.00 0 5 2,564 3,735 5 15 ul0.04 5 0 2,476 3,466 4 15 ul 0.20 5 0 2,333 3,147 3 15 ul 1.00 5 0 2,3723,218 2 15 ul 5.00 5 5 2,007 2,891 Experiment #2 1 15 ul 0.00 0 5 1,9462 15 ul 0.25 5 0 1,701 3 15 ul 1.25 5 0 1,907 4 15 ul 5.00 5 0 1,575 515 ul 12.5 5 0 1,672

Example 12: Zone of Inhibition (Solid Support Assay)

Diameter of zone of inhibition is determined as described by Ames B. A,et al 1973. Ellicit Transport: The oligopeptide permease. PNAS.70(2):456-458, the content of which is hereby incorporated by reference,particularly with respect to the experimental methods described therein.A 0.1 mL of a nutrient broth culture of each bacterial strain is spreadas a lawn to the soft agar layer of a minimal medium Petri plate. Filterpaper discs (6 mm) are placed on the inoculated plate and then 15 uL ofdifferent concentration ranges of each test article is placed on eachdisc. Incubation is carried at 37° C. overnight and diameter of eachzone of inhibition (mm) is measured in by appropriate ruler. Theefficacy of each test articles is compared to positive and negativecontrol.

Example 13: Zone of Inhibition for Methionine Analogs

The Zone of Inhibition assay was prepared by mixing 3 g of powder (Difconutrient agar) with 100 ml (3% w/v) of distilled water in a 250 mLflask, placing the flask in a boiling-water bath until the medium wasclear. After sterilization (autoclaving) flask containing the meltedagar was placed in a water bath at 56° C. to maintain a liquid stateuntil poured. To prepare plates, 50 mL of melted agar was mixed with 50mL (1:1 ratio) of Minimal media (called M9). To provide a layer which isuniformly about 5 mm deep, 20 ml of agar media was poured onto an assayplate (100 mm in diameter) and allowed to harden. For seed the cells,100 μL of over night grown culture of E. coli cells are evenly spreadover the agar surface using sterile spreader. To test the antimicrobialactivity, sterile filter paper disks (5 mm in diameter) are asepticallyplaced on designated spots and then each disk is impregnated with 10 μLof 15.6 mM test analogs (I-Z or I-AB) or control solutions (10 μL of0.06% diluted bleach in PBS). Plates are allowed to incubate at 37° C.for 24-to-48 hours until zone of inhibition is observed. The zone ofinhibition in this assay is directly proportional to the strength ofantimicrobial agent. Results for analog I-Z and I-AB are shown in FIG.5.

Example 13: Bacterial Growth Inhibition (Liquid Assay)

This assay is performed as described by Cascieri, T and M. F. Mallette1974. New method for study of peptide transport in bacteria. AppliedMicrobiology, 27(3): 457-463, the content of which is herebyincorporated by reference, particularly with respect to the experimentalmethods described therein. A 1 mL of test bacterial cells grownovernight is inoculated into 100 mL of fresh minimal media containingthe following materials in grams per litter of distilled water: 8 g ofNa₂HPO₄.12H₂O, 10.0 g of KH₂PO₄, 1.0 g of NH₄Cl, 0.5 g of NaCl, 0.41 gMgSO₄.7H₂O, 20.0 g glucose. Cells were incubated in 37° C. shaker andgrowth curves are determined from turbidity (optical density) at 650 nmover hourly intervals for total of 6-12 hr. The efficacy of each testarticles is compared to positive and negative control.

Example 14: Wound Healing of Methionine Analogs

Established rat chronic granulating wound models may be utilized to testfor topical wounds treatment therapy. Chronic granulating wounds areprepared as previously described (Robson et al Hypochlorous acid as apotential wound care agent. J of Burns and Wounds. 2007. April 11;80-90. Robson et al. The efficacy of systemic antibiotics in thetreatment of granulating wounds. J. Surg Res. 1974; 16:299-3006). MaleSprague-Dawley rats weighing 300-350 grams are acclimated in thefacility for a week prior to use. Under intraperitoneal Nembutalanesthesia (35 mg/kg), the rat dorsum is shaved and depilated. A fullthickness dorsal burn measuring 30 cm² is created by immersion inboiling water. Infected groups are seeded with 5×10⁹ CFU Escherichiacoli (ATCC 25922) after animals have been allowed to cool for 15 min.Animals are individually caged and given food and water ad libitum.Uninfected, control animals are kept in a physically separate facility.Five days after burning, the eschar is excised from anesthetized animalsresulting in a chronic granulating wound. Histological characterizationof the wound with comparison to a human granulating wound is done. Allexperiments are conducted in accordance with the AALAC Guidelines, andIAACUC at TOXiKON (Bedford, Mass.).

Treatment Groups: 24 rats are divided into 6 groups of 3-5 animals each.The groups are treated as shown in Table 12.

TABLE 12 Rat Treatment Groups for Wound Healing Study. Group TreatmentOption Animals Per Group I Uninfected 3 II Infected/Normal Saline 3 IIIInfected/Methionine Analog (low dose) 5 changed q24 hrs IVInfected/Methionine Analog (mid dose) 5 changed q24 hrs VInfected/Methionine Analog (high dose) 5 changed q24 hrs VIInfected/Silvadene changed q24 hrs 3

Animal Procedures: In these experiments, rats are pre-medicated withbuprinorphine (0.1 mg/kg) and anesthetized with halothane inhalation onpost-escharectomy days 4, 8, 12, 16 and 20. Any dried exudates thatformed are atraumatically removed. Wounds are biopsied for quantitativebacteriology on the day of escharectomy (day 0) and on each of the daysof re-anesthesia according to the methods described by Heggers andRobson (Heggers J P, Robson M C. Quantitative Bacteriology: Its role inthe armamentarium of the surgeon. Boca Raton, Fla.: CRC; 1991.). Thewound surface is cleaned with 70% isopropyl alcohol prior to biopsy toexclude surface contamination. Biopsies are aseptically weighed,homogenized, serially diluted, and back plated onto non-selective media.Bacterial counts are completed after 48 hours incubation and expressedas colony forming units (CFU) per gram of tissue.

While the rats are anesthetized for the wound biopsies, outlines of theof the wounds are traced onto acetate sheets, and area calculations areperformed using computerized digital planimetry (Sigma Scan JandelScientific, Corte Madera, Calif.). Care is taken only to record theperimeter of the wound that represents the advancing full-thicknessmargin rather than the edge of any advancing epithelium. This avoids thesmall component of advancement provided by the smooth, pink translucent,hairless neoepithelium (Kuhn et al. Basic fibroblast growth factor in acarboxymethylcellulose vehicle reverses the bacterial retardation ofwound contraction. Wounds. 2001; 13:73-80). All animals are weighed atthe time of biopsy and wound measurement. The animals are sacrificed byNembutal overdose and bilateral Thoracotomies when the wound hascompletely healed or decreased to less than 10 percent of its originalarea. Hayward et al demonstrated that measurement of very small woundsby manual tracing introduced significant systematic error and found thatwounds followed past this point remained static for prolonged periods oftime (Hayward et al. Fibroblast growth factor reverses the bacterialretardation of wound contraction. Am. J. Surg. 1992; 288-293).

Statistical Analysis. Mean bacterial counts for each group of animals inboth experiments are determined and expressed a CFU/gram of tissue.These values are compared for each experiment separately using a one-wayanalysis of variance. Post-hoc analyses of differences between groupsare carried out using Tukey's Test (all pairs, multiple-comparison test)with p<0.05 considered significant. Sigma Stat statistical software(Jandel Scientific, Corte Madera, Calif.) is used for data analysis.

Serial wound area measurements are plotted against time. For eachanimal's data a Gompertz equation is fitted (typical r2=0.85) (18).Using this approach a best fit curve is generated for each group.Comparison between groups is performed using life table analyses and theWilcoxon rank test. These statistical analyses are performed using SAS(SAS/STAT Guide for Personal Computers, Version 6 edition, Cary, N.C.,1987, p 1028) and BMDP (BMDP Statistical Software Manual, Los Angeles,BMDP Statistical Software, Inc. 1988) package on a personal computer.

Example 15: In Vitro Protein Translation Inhibition

Prokaryotic Cell-Free Translation Systems or Rabbit Reticulocyte LysateTranslation Systems (RRLTS) may be used in to study the properties ofthe methionine compounds as inhibitors of protein translation. These invitro systems play an important role in characterization of mRNAtranslation products, investigation of transcriptional and translationalcontrol, and co-translational processing of secreted proteins by theaddition of microsomal membranes to the translation reaction. RabbitReticulocyte Lysate is prepared from New Zealand white rabbits injectedwith phenylhydrazine using a standard protocol to increase reticulocyteproduction (Pelham and Jackson, 1976). The reticulocytes are harvested,and any contaminating cells that could otherwise alter the translationalproperties of the final extract are removed. After lysis of thereticulocytes, the extract is treated with micrococcal nuclease todigest endogenous mRNA and thus reduce background translation to aminimum. The lysate contains the cellular components necessary forprotein synthesis: tRNA, ribosomes, amino acids, and initiation,elongation and termination factors. Rabbit reticulocyte lysate has beenreported to contain a variety of post-translational processingactivities, including acetylation, isoprenylation, proteolysis and somephosphorylation activity (Glass and Pollard, 1990). Processing eventssuch as signal peptide cleavage and core glycosylation can be examinedby adding canine microsomal membranes to a translation reaction(Andrews, 1987; Walter and Blobel, 1983; Thompson and Beckler, 1992)

General guideline for setting up of an in vitro translation reaction:The reaction uses [35S]methionine as the radiolabel; other isotopes mayalso be used. For the positive control reaction, one can use 1-2 μl ofthe Luciferase Control RNA. The reaction components shown in Table 13are then set up in a 0.5 mL or 1.5 mL tube. A negative control is alsoprepared containing no added template to allow measurement of backgroundincorporation of labeled amino acids. The translation reaction isincubated at 30° C. for 60-90 minutes. The results of translation areanalyzed by gel electrophoresis and autoradiography.

TABLE 13 Rat Treatment Groups for Wound Healing Study. Component VolumeFlexi ® Rabbit Reticulocyte Lysate 34 μl Amino Acid Mixture MinusMethionine (plus various BXP 1 μl analogs), 1 mM [35S]methionine (1,200Ci/mmol at 10 mCi/ml) 2 μl Magnesium Acetate, 25 mM 0-4 μl PotassiumChloride, 2.5M 1.4 μl DTT, 100 mM 0-1 μl RNasin ® Ribonuclease Inhibitor(40 u/ml) 1 μl RNA substrate 1-12 μl Nuclease-Free Water to final volume50 μl

1-151. (canceled)
 152. A method of treating a bacterial infection in anindividual comprising administering to the individual an effectiveamount of a compound of the formula:

wherein q is 1 or 2; R⁸ is hydrogen or C₁-C₅ alkyl; and C is anoptionally substituted L-amino acid residue wherein said substituent isselected from the group consisting of hydroxyl, nitro, amino, cyano,halo, C₁-C₄ haloalkyl, thiol, C₁-C₄ thioalkyl, sulfonyl, thioamido,amidino, formyl, C₁-C₄ alkyl, C₃-C₉ cycloalkyl, C₁-C₄ alkoxy, and C₁-C₄alkoxy-C₁-C₄ alkyl; or a pharmaceutically acceptable salt thereof orsolvate of the foregoing.